Shewanella sp. YLB-09: FS418_20260
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Entry
FS418_20260 CDS
T11533
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shey Shewanella sp. YLB-09
Pathway
shey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FS418_20260 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shey03019
]
FS418_20260 (pnp)
03016 Transfer RNA biogenesis [BR:
shey03016
]
FS418_20260 (pnp)
Enzymes [BR:
shey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FS418_20260 (pnp)
Messenger RNA biogenesis [BR:
shey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FS418_20260 (pnp)
Transfer RNA biogenesis [BR:
shey03016
]
Prokaryotic type
tRNA degradation factors
FS418_20260 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_RRP5
S1_2
OB_PDCD11
KH_KhpA-B
KH_NusA_2nd
aRib
S1_TP0910
DUF3016
Motif
Other DBs
NCBI-ProteinID:
QFU23953
LinkDB
All DBs
Position
complement(4737931..4740039)
Genome browser
AA seq
702 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEEEPGRDFFPLTV
NYQERTYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PEINPDVISMIGTSAALAISGLPFNGPLGVARVGYINGEYILNPEVSQLAESDLDLIVAG
TEGAVLMVESEAASLAEEVMLGSVAYGHEQQQVVITAIKELKAEAGKPAWDWSAPVADAD
LVEKIRVLAEANFAAAYQIADKSERRDAVNALKSDAIEKLVAENADIDLREVGKLLGSLE
KKVVRGRIIAGNPRIDGREPDMVRGLNVMAGVLPRTHGSAIFTRGETQALVTCTLGTERD
AQKVDSIMGEYTNRFMLHYNFPPYCVGETGFVGSPKRREIGHGKLAWRGINAVMPSAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQAI
GSHRDDISDHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSN
GEATKEAIRRIEEITAEVEVGTIYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN
VSDYLQTGQEVKVKVMEVDRQGRVRLSMKEAQPKAEAAPAAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaagagttttgagtatggtcagcacacagtcacattagagactggg
gtaatagcacgtcaagcagacgctgccgttttagcaagcatgggcgatactacagtattg
gttactgtagttggaaagaaagaagaagagccgggtcgcgactttttccctcttaccgtg
aattaccaggaaagaacttacgcagcgggtaaaatcccgggtggtttcttcaagcgtgaa
ggtcgtccatctgagagtgaaacgctgatcgcacgtcttattgaccgtccgattcgtcca
ttattccctaacggcttcaagaatgaagttcaggtcatcatcacagtggtttctgtggat
cctgaaatcaaccctgatgtcatctctatgataggtacttctgcagccctagctatatct
ggtctgccattcaatggtccactgggtgtagcacgcgttggttatatcaacggcgaatat
atacttaaccctgaagttagtcagttagccgaaagtgacctagacctaatcgtcgcaggt
actgaaggcgctgtattgatggttgagtctgaagctgcatcattggcagaagaagtgatg
ctaggcagtgttgcctatggtcatgagcaacagcaagttgttatcactgccatcaaggaa
cttaaagccgaagcgggcaagcctgcatgggattggtctgctccggttgccgatgcagac
ttggttgagaagatccgtgttcttgccgaggctaattttgccgctgcataccagattgct
gataagagcgagcgtcgtgatgcggttaacgcacttaagagtgatgctatcgagaagctt
gttgctgagaatgccgatatcgatctacgtgaagtaggcaagttgcttggaagtttagag
aaaaaagtcgtacgtggccgcatcatagcgggtaacccacgtattgatggtcgtgagcct
gatatggttcgtggtcttaatgtgatggccggtgtacttccacgtactcacggtagcgca
atatttactcgtggtgagactcaagcactagtgacttgtactcttggtaccgagcgtgat
gcacagaaagttgacagcatcatgggcgagtacactaaccgctttatgcttcattataac
ttccctccttactgtgtgggcgagacaggttttgttggttcacctaagcgtcgtgaaatt
ggtcacggtaaactagcttggcgtggtattaacgcagttatgccttctgctgaagaattc
ccatacagcgttcgtgtcgtttcagaaattactgaatcaaacggttcaagctctatggct
tctgtatgtggtacttctcttgctcttatggatgcgggtgtaccaattaagacttctgtt
gctggtattgctatgggcctagttaaagagggtgacgatttcgtcgtactttctgacatc
ttaggtgatgaagatcacttgggtgatatggactttaaagttgccggtactcgtgatggt
atcactgcattgcagatggatatcaagatcgaaggtatcacgcaagagatcatgcagatc
gcacttcagcaagcttatggcgctcgagttcatatccttaacgtgatggaccaggctatt
ggttcacatcgtgatgatatctctgatcacgcaccacgtatcaccactatcaagatcaac
cctgagaagatccgtgatgtgattggtaaaggtggcgctacaattcgtgcgcttactgaa
gagactggtactacaatcgaacttgatgatgacggtactgttaagatcgcatcgtctaac
ggtgaagcgactaaagaagctatccgtcgtatcgaagagatcacagctgaagttgaagtc
ggtactatctataacggtaaagttgtacgaatcgtagatttcggtgcattcgtgacaatt
cttccaggtaaagatggtctagttcacatctctcagattgctgaagagcgtgttgctaat
gtttctgactacctacagacaggtcaagaagtgaaagttaaggtgatggaagttgatcgc
cagggtcgtgtacgtctttcaatgaaagaagcacaacctaaagcagaagctgcaccagct
gcagaataa
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