Shewanella sp. YLB-09: FS418_23870
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Entry
FS418_23870 CDS
T11533
Symbol
groL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
shey Shewanella sp. YLB-09
Pathway
shey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FS418_23870 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shey03019
]
FS418_23870 (groL)
03110 Chaperones and folding catalysts [BR:
shey03110
]
FS418_23870 (groL)
03029 Mitochondrial biogenesis [BR:
shey03029
]
FS418_23870 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shey04147
]
FS418_23870 (groL)
Enzymes [BR:
shey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
FS418_23870 (groL)
Messenger RNA biogenesis [BR:
shey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
FS418_23870 (groL)
Chaperones and folding catalysts [BR:
shey03110
]
Heat shock proteins
HSP60 / Chaperonin
FS418_23870 (groL)
Mitochondrial biogenesis [BR:
shey03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
FS418_23870 (groL)
Exosome [BR:
shey04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
FS418_23870 (groL)
Exosomal proteins of other body fluids (saliva and urine)
FS418_23870 (groL)
Exosomal proteins of breast cancer cells
FS418_23870 (groL)
Exosomal proteins of colorectal cancer cells
FS418_23870 (groL)
Exosomal proteins of bladder cancer cells
FS418_23870 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
QFU24580
LinkDB
All DBs
Position
complement(5570590..5572242)
Genome browser
AA seq
550 aa
AA seq
DB search
MAAKEVLFGNDARVKMLAGVNVLANAVKVTLGPKGRNVVLDKSFGAPLITKDGVSVAKEI
ELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVTEGLKAVAAGMNPMDLKRGI
DKAVIAAVAELKNLSQECSESKAIAQVATISANADETIGEIIATAMERVGKEGVITVEEG
QALENELDVVEGMQFDRGYLSPYFINKPETGSVELESPFILLVDKKISNIRELLPILEGL
AKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDVAILTGGTV
IAEEIGLELEKATLEDLGTAKRVIITKDDTTIIDGNGEETQIKARVSQIKIQAEESTSDY
DKEKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALV
RVASKIGDVAVINEDQKHGVIIALRAMEAPLRQIAANAGEEGSVVANNVKNGTGNYGYNA
GNDTYGDMLEMGILDPTKVTRCALQFAASIAGLMITTEAMVCDAPQEAGAGDMGGMGGMG
GGMGGMGGMM
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaaagaagtattatttggtaacgatgcacgcgtaaaaatgcttgcaggcgtt
aacgtactagcaaacgcagtaaaagtaactttgggcccaaaaggtcgtaacgttgtacta
gacaagagcttcggtgctccactgatcactaaagatggtgtgtctgttgctaaagagatc
gaacttgaagacaagttcgaaaacatgggcgcacagatggttaaagaagttgcttctaaa
gccaacgatgcagccggtgacggtactactacagcaacagtgcttgctcagtctattgtg
actgaaggcctaaaggcagttgctgctggtatgaacccaatggatcttaagcgcggtatc
gacaaagcggttatcgctgcagttgccgagcttaaaaacctatctcaagagtgttcagag
tctaaagcgattgcacaagttgctacgatttcagcaaacgctgatgagactatcggtgaa
atcatcgcaacagcgatggagcgcgttggtaaagagggcgtgatcactgttgaagagggt
caggcactagagaacgaactagacgttgttgaaggtatgcagttcgaccgcggttaccta
tctccatacttcatcaacaagccagagactggcagcgttgagctagaaagcccgttcatc
ctacttgttgacaagaaaatctcaaacatccgtgaattgctgccaattcttgaaggtcta
gctaaaacaggtaagccactgcttatcgttgcagaagacgttgaaggcgaagcactagct
actcttgttgtaaacaacatgcgcggtatcgtgaaagtggcagctgttaaggcgccaggt
ttcggtgaccgtcgtaaagctatgctacaagatgtcgcaatcctaactggcggtactgtt
atcgctgaagagattggtctagagcttgaaaaagcgacgctagaagatcttggtactgct
aagcgcgttatcatcactaaagatgacaccactatcattgacggtaacggtgaagagact
caaatcaaggctcgcgtttcacagatcaagatccaagctgaagagtcaacgtcagattac
gacaaagagaagcttcaagagcgtatggctaaacttgctggcggcgtagccgttatcaag
gttggcgcagccactgaagttgaaatgaaagagaagaaagctcgcgtagaagatgcacta
cacgcgactcgcgctgctgttgaagagggtgtggttgctggtggtggtgttgcactggta
cgtgttgctagcaagattggcgatgttgcagttatcaacgaagaccagaagcacggtgtg
attattgcacttcgcgctatggaagcaccactacgccaaatcgcggctaacgcgggtgaa
gaaggttcagttgttgctaacaacgtgaagaacggcacaggtaactacggttacaacgcc
ggtaacgacacttacggtgacatgctagagatgggtatccttgacccaactaaagtgaca
cgttgtgcactacagtttgcagcatctattgcaggcctaatgatcacaaccgaagctatg
gtgtgtgatgcaccacaagaagctggcgctggtgatatgggcggcatgggcggaatgggc
ggtggtatgggcggaatgggcggcatgatgtaa
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