Shewanella sp. FDAARGOS_354: CEQ32_00240
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Entry
CEQ32_00240 CDS
T04944
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10943
two-component system, response regulator FlrC
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf02020
Two-component system
shf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CEQ32_00240
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CEQ32_00240
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
shf02022
]
CEQ32_00240
02035 Bacterial motility proteins [BR:
shf02035
]
CEQ32_00240
Two-component system [BR:
shf02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
CEQ32_00240
Bacterial motility proteins [BR:
shf02035
]
Flagellar system
Flagellar assembly proteins
Others
CEQ32_00240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
Mg_chelatase
HTH_30
AAA_16
AAA_19
HTH_24
MerR
AAA
AAA_14
AAA_7
nSTAND3
AAA_3
FleQ
MCM
HTH_50
NB-ARC
AAA_18
Motif
Other DBs
NCBI-ProteinID:
ASF13631
LinkDB
All DBs
Position
46660..48000
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AA seq
446 aa
AA seq
DB search
MSEAKLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAIIALKQHQFDLVISDVQMQGI
GGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLP
LKQNSDQPVVADEKSIALLSLAQRVAASDASVMILGPSGSGKEVLARYIHQHSSRAEEAF
VAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEISEMDLGLQAKL
LRVLQEREVERLGGRKTIKLDVRVLATSNRDLKAVVAAGQFREDLYYRINVFPLTWPALN
QRPADILPLARHLLAKHAKALNVLDLPEFDEAACRRLLSHRWPGNVRELDNVVQRALILR
AGAVISANDIIIDAQDVPLSSDDAEYANEPEGLGEELKAQEHVIILETLAQCQGSRKLVA
EKLGISARTLRYKMARMRDMGIQLPN
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagccaaattactcttagtcgaagacgatgcgtccctgcgtgaggctttgctc
gataccttaatgttggcgcaatacgactgcatcgatgtggcctccggcgaggaagccatt
atcgcattgaagcaacatcagtttgacttagtgatcagcgatgtgcagatgcagggcatt
ggcggcttaggcttattaaattacttacagcagcatcaccccaagctgccggtgttgctg
atgacggcatatgccaccattggtagtgctgtcagtgcaattaaattgggcgccgtggat
tatttggctaaaccctttgctccagaggtgttgctcaatcaagtttcccgctatttacca
ctcaaacaaaatagcgatcaacccgtcgtggcggatgaaaagagcattgcattactatcc
ttagcacagcgggttgcagcttctgatgcttcggtgatgatcctcgggccaagcggctcg
ggtaaagaagtattagcccgttatattcatcaacatagtagccgtgccgaagaggcgttt
gtggccatcaattgtgcggccatccccgagaatatgctcgaggcgaccttattcggttat
gaaaagggcgcttttactggggcttatcaggcatgtcctggtaagtttgagcaggcgcag
ggcggcaccttattactcgatgaaatatctgaaatggatttgggacttcaggctaaactg
ctgcgtgtgctgcaagagcgagaagtggagcgtttaggcggtcgcaaaaccattaagtta
gatgttcgggtgcttgccacttcgaatcgggatttaaaggccgtggttgccgcagggcaa
ttccgggaagatctctattatcgcattaacgtgtttccactgacctggcctgcactgaat
caacgtcctgctgatattttgcccttagctcggcatttactcgctaaacacgcaaaggcg
ctaaatgtgcttgatttaccagagtttgatgaagctgcttgtcgtcgtttactcagtcac
cgctggccgggtaatgtgcgggagttggataacgttgtccaacgcgcgttaattttacgt
gctggggctgtgattagtgccaacgatattattatcgatgcccaagatgtgcctctgtca
tccgatgacgccgaatacgccaacgagccggaaggtttaggtgaagagttaaaagcgcag
gagcatgtgatcattctcgaaaccttagcgcaatgccaaggtagtcgtaagctggttgcc
gaaaaacttgggatcagtgcgcgcaccttaagatacaagatggccagaatgcgcgatatg
gggattcaattgcccaactaa
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