Shewanella sp. FDAARGOS_354: CEQ32_00880
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Entry
CEQ32_00880 CDS
T04944
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf00521
Streptomycin biosynthesis
shf00523
Polyketide sugar unit biosynthesis
shf00525
Acarbose and validamycin biosynthesis
shf00541
Biosynthesis of various nucleotide sugars
shf01100
Metabolic pathways
shf01110
Biosynthesis of secondary metabolites
shf01250
Biosynthesis of nucleotide sugars
Module
shf_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
CEQ32_00880 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
CEQ32_00880 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
CEQ32_00880 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
CEQ32_00880 (rfbB)
00525 Acarbose and validamycin biosynthesis
CEQ32_00880 (rfbB)
Enzymes [BR:
shf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
CEQ32_00880 (rfbB)
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Ortholog
Paralog
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
NAD_binding_10
KR
Sacchrp_dh_NADP
DapB_N
TrkA_N
NmrA
Motif
Other DBs
NCBI-ProteinID:
ASF13742
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All DBs
Position
172338..173369
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AA seq
343 aa
AA seq
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MRILITGGAGFIGSALVRMLIEQTMCIVINVDKLTYASHPEALAAIADSERYHFIQADIC
DGATLEQVFQAHQPDVVMHLAAESHVDRSIEGPAAFIQTNIVGTYTLLEASRRYWQQLAD
TRKGLFRFHHVSTDEVFGSLTETGLFSETSAYDPSSPYSASKASADHLVRAWHRTYALPI
VMTNCSNNYGPFQYPEKLIPLMVTNALQGKPLPIYGNGQQVRDWLYVDDHVKALYLVATQ
GELGQTYNIGGSCEQTNLTVVRQICALLEELVPTHPQSLAMGSAGFADLIQYVVDRPGHD
VRYAIDASKIQRELGWRAQESFESGLRKTVEWIINQQYPITSD
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatactcattaccggtggtgcagggtttattggatcggcattagtgcgaatgctg
attgagcaaacgatgtgcatcgtgatcaatgtcgataagttaacctatgccagtcatcca
gaggctttagcggctattgccgatagtgagcgctatcatttcatacaggcggatatttgt
gatggagcgacattagagcaagtctttcaggctcatcagcccgatgtggtaatgcattta
gcggctgaaagtcatgttgatcgctcaattgaaggacccgctgcatttatccaaaccaac
attgtgggcacctatacgttgttagaagcttcgcgccgatattggcagcaattagcggat
acgcgaaaagggttatttagatttcatcatgtttctaccgatgaggtttttggttcactg
accgaaactggattgtttagtgaaacctcagcttatgatccgagctcgccttattcagca
agtaaagcttcagcggatcatttggttcgtgcttggcatcgaacttatgctttaccgata
gtgatgaccaactgctccaataactatggcccttttcaataccctgaaaagctcattccc
ctaatggtcaccaatgcgttacagggtaaaccgttgccaatttatggtaatggtcagcaa
gtgcgtgattggttgtatgtggatgatcacgttaaggcgctctatttagttgcgactcag
ggggagcttgggcaaacctataatattggtggttcctgtgagcaaactaatttgacggtt
gtgcggcaaatttgcgccttattagaggagttagtgcctactcatccgcaatctcttgca
atgggtagtgcgggttttgctgatttaattcagtatgttgttgaccggcctggccatgat
gtacgctatgctattgatgccagtaaaattcaacgtgaattaggttggagagcgcaagag
tcttttgagtcaggtctcagaaagacggtggagtggattattaaccagcaatatcctata
acgagcgactag
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