Shewanella sp. FDAARGOS_354: CEQ32_02280
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Entry
CEQ32_02280 CDS
T04944
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
shf
Shewanella sp. FDAARGOS_354
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_02280
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CEQ32_02280
Archaeal homologous recombinant proteins
CEQ32_02280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
GTP_EFTU
cobW
Motif
Other DBs
NCBI-ProteinID:
ASF13973
LinkDB
All DBs
Position
489963..493019
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPLQLSMSAFGPFASTQTIDFTELGDNPLFLINGPTGAGKTTLLDGICFALYGKTTGNE
REGSQMRCDMADDNLLTEVTFSFKLGNTAYRIRRVPEQDRLKKNGEGSTVQKSEAQLFKI
APDGTETLLVASKVSEATAEIEALTGLDVEQFRQVMVLPQGKFRELLMADSKAREQIFSQ
LFQTHIYKRIEDILKAKAADIRGLVKEQRARRDGILQTAELASDDELAAEFSRIEPELAA
AIAAKERSTAAHLQALKQHDSAQQRFAEFTRLSELESQATLLHEQQADIAAQTARLNVAK
QAQRLKPLLDNALSREQEATIANDQRSHAQMALDTAKLALAKAEIEAQELIPLEQQLRDF
EQQHNQLSTLVPQLAEFSSLEQALSQAKEILQQTKEQGQETKTALVSLVDQRSTYENQLP
ALQQQSERQLATAQALQQQRHLLELFKQWQQICAKVAQTEEALVQAGLQGKMLNAQHQAA
LSDYKSLQFNWFQGQAAILARELKLDEPCPVCGSIEHPHPATSHDHLPTDAQLQAAQDAE
VNALEQLSKARAEYRGLQKQLEAQQSQANELASSLGDTVELPLESHVHRLEELTRQAKQA
EVATQALQQLQQQIKALQQQELALTQQLELERERYHQQEGEVARLSGQLAEKALRIPEEY
RSLTALNQAINNNQRQLENTREQIHALRNSLKQASEHCVAAQTALEAAIQRCHSADEQQA
VADGDLNSQLHLAGFTDRDALRAALLADEQIQALGERIETYHRQCALNQSQLDQLRTELS
DVSVPDLDALEAMLAEKHQQLNLAEATWSQLNTRFSLLKQTQTQLSIVDQKAKALEDEYA
IIGTLADVANGNTGNKISLQRFVLSVLLDDVLLAATQRLHLMSKGRYRLLRKEDRAKGNK
ASGLELEVEDAYTAKVRPVATLSGGESFMAALSMALGLSDVVQAYAGGIKLDTLFIDEGF
GSLDQDSLELAIRTLMDLQSAGRMIGVISHVSEMKEQINTRIDLLKTSHGSEIKMILP
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaagccactacaactttccatgtcggcttttggtccgtttgcttcgactcagacaatt
gattttactgaacttggtgataatccgttatttttgatcaacgggccaactggcgcgggt
aaaacgactctgctcgatggtatctgctttgcgttgtatggaaaaaccactggcaatgag
cgtgaaggcagccaaatgcgctgcgatatggccgatgataatctgcttactgaggtgacc
tttagttttaaattgggtaacactgcttatcgtattcgccgagtgcccgaacaggacaga
ctcaaaaagaatggcgagggttcgacagtccaaaagagcgaggcgcagctgtttaagatc
gctcccgatggtactgaaaccctattagtcgccagtaaagtctcagaggcaacggctgaa
attgaagcgttaacgggcttagacgtagaacaatttcgtcaggttatggtgctgccacag
gggaagtttcgtgaattactcatggctgactccaaggcgcgtgagcaaatttttagtcaa
ttatttcaaacccatatctataaacgtattgaagatatcttaaaggcgaaggcggccgat
atccgcggcttggttaaagagcagcgtgcgcgtcgcgatggcattctacaaaccgcggag
ctagcgagtgacgacgagcttgccgctgaatttagtcgaatagaacccgaattggcggcc
gctatcgccgcgaaagaacgtagcacggcggcgcatctacaggcgttaaaacagcatgac
agtgcgcagcaacggtttgctgaatttactcgtttaagtgaattagaatcccaagccact
ttgcttcatgaacagcaagcagatattgcagcgcaaacggctcgcctgaatgtggcaaag
caagcgcagcgtcttaagcccttattggataatgcgttatcgagggagcaggaagcgaca
attgctaatgatcagcgcagccatgcccaaatggctctcgatacggcaaagcttgcgctt
gccaaagctgagatcgaagcgcaggaacttattccccttgaacaacagctgcgcgatttt
gaacaacaacataatcaactcagcacgttagtaccgcagttggcagaattttctagcctt
gaacaagctttatcgcaggcaaaagagatactgcaacaaaccaaagagcaggggcaagag
actaagacggcgcttgtaagcttagttgatcagcgcagcacctatgaaaatcaattgcca
gcattacaacagcaaagtgagcgtcaactcgcgaccgcacaagccttgcagcaacagcgc
cacttacttgagttgttcaaacaatggcaacaaatctgcgccaaagttgcacaaaccgaa
gaggcacttgtacaagcaggattacaaggaaagatgctgaacgcgcagcatcaggcagcg
ctaagtgactataagtctttacagttcaactggtttcaaggtcaagcagccattttagcg
agggaactcaaactcgatgaaccctgcccagtttgcggcagtatcgagcatcctcatcct
gcaaccagtcatgatcatttaccaacggacgcacagctgcaagctgcgcaggatgccgag
gtgaatgcactcgaacagctcagcaaagcgagggcagagtatcgggggctacaaaaacag
ttagaagcacagcagtcgcaggcaaatgaactggcctcctcgctgggggatacggttgag
ttaccacttgaatcgcatgtccatcggcttgaggaattaacacgccaagcaaaacaagct
gaagtcgccacccaagcattgcagcagttacagcagcaaatcaaagcgttgcagcagcaa
gagttagcattgacgcaacaattagagcttgagcgtgagcggtatcatcaacaagaaggt
gaagtggcgcgtctatccggtcaattagcggaaaaggcgcttcggatccctgaggaatac
cgctcgcttactgcgttaaatcaagcgattaataataatcaacggcagcttgagaacact
cgtgagcagattcatgctcttagaaactcactaaagcaggcatctgagcattgtgtggcg
gcgcaaacggcgctagaggcggcgatacaacgctgccatagcgcagatgagcagcaggct
gtggccgatggtgaccttaactcacaactgcatttagcggggtttactgatagggacgca
ttaagggcggcattgttagccgatgagcaaattcaagcgttgggcgagcgtattgaaacc
tatcatcgacagtgcgccttaaatcaatcacagcttgatcagctaagaactgagcttagt
gatgtcagcgtgcccgaccttgatgccctagaagccatgctcgcagaaaagcaccaacaa
cttaatctcgctgaagctacatggagccaacttaatacgcggttctctttgcttaaacaa
actcaaacacagctcagtattgtcgatcaaaaagcgaaagcccttgaggatgaatacgcc
attattggcaccttggccgatgtggccaatggcaataccggcaacaagatttctctgcaa
cgttttgtattaagcgtattactcgatgatgttttactcgcagcaactcagagattacac
ctgatgagtaaaggccgttatcgattactgcgtaaagaagacagagcgaagggaaataag
gcatcagggcttgagcttgaagtcgaagatgcttacaccgcaaaagtgcgtcccgtggcg
acattaagtggtggggagagttttatggcagctttatctatggcgctgggtttatcagac
gtggtgcaagcctacgccggtgggataaaacttgatacgttatttatcgacgaaggtttt
ggcagcctagatcaggactcccttgaacttgccatccgtaccttaatggatttgcaatct
gcgggtaggatgatcggcgtgatatctcatgtttctgagatgaaagagcagataaacact
cgaatagatctgttgaaaacctcccatgggagcgaaatcaagatgattttgccttag
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