Shewanella sp. FDAARGOS_354: CEQ32_02515
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Entry
CEQ32_02515 CDS
T04944
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ32_02515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shf03019
]
CEQ32_02515
03009 Ribosome biogenesis [BR:
shf03009
]
CEQ32_02515
Enzymes [BR:
shf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CEQ32_02515
Messenger RNA biogenesis [BR:
shf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEQ32_02515
Ribosome biogenesis [BR:
shf03009
]
Prokaryotic type
rRNA processing factors
CEQ32_02515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ASF14016
LinkDB
All DBs
Position
complement(539366..542656)
Genome browser
AA seq
1096 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPAGMGLIVRTAGVGKESTEL
KWDLKVLQHHWAAITEAAQTKGAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA
KQHIALVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTP
DYRVIRHRTDDEIDESSYKRIEQPEAKLYEPRKLERTAAPAPALKGFAAPQKVEQDTAPV
AKVETAQPGFFSKLFSAIGAFFSSSDNAVAEKSTETKKPDSQATNANRRNRRNDTRRTRN
PQDTEKAKEGTREPRTRNAKKVADAPQAQERPIREKDESAKRAKPEPKPRNQAVKEVIAD
VQDEAPKQEVVRERRQRRNMRRKVRIDNTTDVVETSIQEEAILAELVAINADVTVEVQPE
VKAPRRRQPRKEVTVANEVGDTTVSEAADVVETKPADAIVDMPVVESQADTQVDAKLDTQ
PAAIDEDNAEANVDADDKAKRESRDGQRRSRRSPRHLRAAGQRRRRDEDEQGTTAPAQFI
PNDALGEDQDYPAPTAVVETANLTEQTVAETVAVAVEVEVKSTATQPAPIVHTADVISST
EAAVSQSIATESTVSDTTVTESSAEIKSDAVVAEVTSKPVVNDKAAETVKASDAEPQSAT
EPAVQATEAMQIVTDITPEAKAEEVTPVTEKTEPKEAVKSVASAPMAKPAAFVKPQAKPV
MAQAATAQPTEVVVSKPKASSRFGAMVSSEMTKPTVEVRAQVEVPKGREYENTATAEATE
PKLKHSNSAESDMARP
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgccctcgttgac
gggcaacaactgtacgacctcgatattgaaagtcctggtcatgagcaaaaaaaatcaaat
atttacaagggtaagatcacccgcgtagagccctctttagaagccgctttcgtagactat
ggtgctgatcgccacggctttttaccattaaaagaaattgccagagaatatttccctaaa
ggttattcattccaaggtcgcccaaacatcaaagaagtcgtcagtgaaggacaagaagtt
attgttcaaattgacaaagaagaacgtggcaacaaaggcgcggcgttgaccacctttatc
agccttgctggttcttacttagtgttaatgccaaacaacccacgtgcaggcggtatttct
cgccgtatcgaaggggatgagcgtactgaattaaaagaagctatggccgatttggaagtc
cctgctggtatgggccttatcgtccgtaccgctggtgtgggtaaagagtcgacagagcta
aagtgggacttaaaagttctgcaacaccactgggcggcgatcactgaagcggcgcaaacc
aaaggcgcacctttcctcattcaccaagaaagtaacgtgattgttcgcgccattcgtgac
tatttacgccgtgatgtcggggaaattttaatcgaccatccacgtattttcgaagaagct
aaacagcatatcgcacttgtgcgcccagattttgttgaacgtgtaaaactctacgaagct
gaagtaccgttattcactcacttccaaatcgagtcgcaaatcgaatcggcgttccaacgt
gaagtacgtctgccatcgggtggctcaatcgtcattgacccaactgaagccttaacctct
atcgatatcaactctgcccgtgccaccaagggcggcgatatcgaagaaactgcattaaat
accaaccttgaagccgccgatgaaattgcccgtcaattacgtctacgtgacttaggtggc
ttagtggttattgactttattgatatgacgccagtgcgccatcaacgtgaagtcgaaaac
cgcctacgtgatgccgtgcaccatgaccgcgctcgcgttcaattaggtcgtatttctcgt
ttcggcttgatggaaatgtcacgccagcgtctgcgtccatcattagaagaatccgctgca
catatctgccctcgctgtcatggccaaggcactatccgcagtactgaatctttagcgttg
tcgattctgcgtttgatggaagaagaagccatcaaagaaaatacctcacaaatcgaagcc
attgtgcctgtcgatgtggctgcattcctgcttaacgagaaacgtaaagcgattcgtatc
accgaacaacgccatgacgtggaagtctatgtgatcccagatccacatatgatgacccca
gattatcgtgtgatccgtcaccgcaccgacgatgaaatcgacgaatccagctacaagcgc
attgaacagcctgaagcaaaattgtacgagccacgtaaactggaacgtactgcggcgcca
gctccagccctaaaaggctttgctgctccacaaaaagtagaacaagacactgcaccagtt
gccaaagttgaaaccgcacagccgggtttcttcagtaaactcttcagtgcaattggtgct
ttctttagctcaagtgataacgcagtcgcagaaaagagcaccgagactaagaagccagac
agtcaagccacgaatgccaaccgtcgcaatcgtcgtaacgacactcgccgtactcgcaat
ccacaagatactgaaaaagcgaaagaaggtactcgcgagccacgtactcgtaatgccaaa
aaagtcgccgatgcaccacaagctcaagagcgcccaatccgtgaaaaggatgaaagtgcg
aaacgtgctaagcctgagcctaaaccccgcaatcaagcagttaaagaagtgattgcggat
gttcaagacgaagcaccaaagcaagaggtcgtccgtgaacgtcgtcagcgccgtaatatg
cgccgtaaagttcgtatcgacaacaccacagatgttgtagaaacgtcaattcaggaagaa
gcgattttagctgagttggttgcaatcaatgcggatgtcacggtagaagttcaaccagaa
gtgaaagcgccgcgccgccgccagccacgtaaagaggttacggttgcgaatgaggtcggc
gacaccacagtatcagaagctgctgatgtcgtagaaactaagccagccgatgctattgtt
gatatgcctgttgttgaaagccaagcagacactcaagtggatgctaagttagacactcaa
ccagcggccattgatgaagataacgccgaagcaaatgttgatgcagatgacaaagccaaa
cgtgaatcccgtgatggacaacgtcgtagccgccgtagtcctcgccatctgcgagctgct
ggccaacgccgtcgccgcgatgaagatgaacaaggcacaacggctcctgcgcagttcatt
cctaatgatgcgttaggcgaagatcaagactatccagcaccaactgcagttgttgaaacg
gctaacttaacagagcaaaccgtggctgaaacggttgcagttgcagttgaagttgaagtg
aagagtacagcaacgcagccagcgccgattgtgcacactgctgatgtgatttcctcaact
gaagccgcagtctctcaaagcatagcgactgaaagcacggtatcagataccacagtaact
gaatcctccgcggaaattaagtctgatgctgttgtcgctgaagtcacatctaaacctgta
gttaacgataaggccgctgaaacggttaaagcatctgatgccgagccacaatcagcaaca
gaaccagcagtgcaagccacagaggctatgcaaatagtgactgatataactcctgaagca
aaagccgaagaagtgacaccagtgacagaaaagactgagccgaaagaagcggtaaaatca
gtcgcatcagcaccgatggcgaaacctgcagcgtttgttaaacctcaggcaaaacctgta
atggcgcaagctgctacggctcaaccaacggaagttgtcgtcagcaaaccgaaagcgtct
agccgttttggtgctatggtgtcatctgaaatgactaaaccaacggtagaagtcagagcg
caggttgaagtgcctaaaggccgtgagtatgaaaataccgccaccgctgaagccactgaa
cctaagctgaaacacagcaatagtgctgaatcggatatggctcgtccatag
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