Shewanella sp. FDAARGOS_354: CEQ32_02925
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Entry
CEQ32_02925 CDS
T04944
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shf
Shewanella sp. FDAARGOS_354
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shf03032
]
CEQ32_02925 (topA)
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_02925 (topA)
Enzymes [BR:
shf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CEQ32_02925 (topA)
DNA replication proteins [BR:
shf03032
]
Prokaryotic type
DNA Topoisomerases
CEQ32_02925 (topA)
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CEQ32_02925 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
Motif
Other DBs
NCBI-ProteinID:
ASF17546
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Position
625358..627994
Genome browser
AA seq
878 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSISDGTDKVKPAAEVKKMSP
EEKARYKKMKDHQALVSRMGVNPEKGWAAKYQILPGKEKVVKELQALADSADQIYLATDL
DREGEAIAWHLQEVIGGDPSRYQRVVFNEITKSAIQEAFSKPSSLDTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAELNTPASE
ALRMEVVKYLDSAFEPTNEQQALAAVQALSSASFKVIAREDKATQSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVREMIGKEYGAKYLPAEP
IRYGSKEGAQEAHEAIRPSNVNVEAAALTDMERDAQRLYELIWRQFVSCQMTPAQYDATK
LTVKAGDYELKATGRILRFDGWTRVQTAIKKKNEEDNTLPAVNEGDVLSLVELEPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQERGYVKVENRRFYAEKMGEIVSERLV
NSFAELMSYDFTASMEQTLDDVAKGELDWKKVLDGFYADFTKQLEKAELAPEEGGMRLNQ
MVMTNIKCPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGIEAISDSEDAET
DALRAKHRCGICGTAMDSYLIDEKRKLHVCGNNPVCEGYEVEEGQFKIKGYEGPLIECDR
CGHDMELKNGRFGKYFGCTNAECKNTRKLLKNGEAAPPKEDPIYLPELKCSKSDAHFVLR
DGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPIADDDGNKAAVKFSR
KTKEQYVATEVDGKATGWSAHYVNGKWVSESSAKKAKK
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcaccggccaaagctaagaccattaataaatat
cttggcaaagaattcatcgttaaatcgagcgtaggtcatatccgtgatctgcctacatct
tctatatctgacggcaccgataaggtgaaacctgccgccgaagtaaagaagatgtcgcca
gaagaaaaggcgcgatacaagaagatgaaagatcatcaagcgctggtatcgcgtatgggc
gttaaccctgaaaagggctgggcggctaaatatcaaattctaccgggtaaagagaaagtg
gttaaagagctgcaagccttagccgattctgctgaccaaatttatctcgcaacggactta
gaccgtgaaggggaagccatcgcctggcatttgcaagaggtgattggtggcgatccttca
cgttatcagcgcgtggtgtttaacgagatcaccaaatctgcgattcaagaagcctttagt
aagccttcttccctcgacaccaatatggttaatgcccaacaggcacgacgctttttagac
cgtgtcgtcggctttatggtgtcaccactgttgtggaagaaggttgcccgtggtttatcc
gcaggacgggtacaatctgtggcagtgcgtctcgtggtggaacgcgaaagtgaaatcaaa
gcctttgtgccagaagagttttgggatgtgcatgctgagctcaatacgccagccagcgaa
gcactgcgcatggaagtggttaagtatttagattcagcttttgagccaaccaacgagcaa
caagcgttagccgcggtgcaggccttatcttcggccagctttaaagtgattgcccgtgaa
gacaaagcgactcaaagtaaaccttctgccccctttattacctccaccctgcaacaagcg
gccagtactcgtttaggctttggggtgaagaaaaccatgatgatggcgcagcgcttgtac
gaagcgggtcacatcacgtatatgcgtaccgactcgacaaacctaagccaagaggcctta
gacagcgtacgtgagatgattggcaaggaatacggcgccaagtatttacctgccgagcct
atccgctacggttctaaggaaggcgcacaagaagcgcacgaagcgattcgtccttcaaat
gtcaatgttgaagctgcggctttaactgatatggaacgtgatgcgcagcgcctttacgag
ttaatttggcgtcagtttgtctcctgccagatgacacctgcccaatacgacgcgactaaa
ctcacggtgaaagcaggcgactacgaacttaaagcaacaggacgcatcctgcgctttgac
ggttggacccgtgttcaaactgcaatcaagaagaaaaacgaagaagacaatacgctaccg
gcagtgaacgaaggggatgtattatctctcgttgaactcgagcctaaacaacattttact
aagcctcctgcgcgatacagtgaagcgtcattggttaaagagttagagaagcgcggtatt
ggccgtccgtcaacctacgccaccattatttcgacgatccaagaacgtggctacgtgaaa
gtggaaaaccgccgcttctacgctgaaaaaatgggcgaaatagtcagtgaacgcttagtc
aatagttttgccgagttgatgagctatgactttaccgccagcatggaacagaccctcgac
gatgttgctaagggtgagttggattggaaaaaagtgctcgatggtttctatgctgacttc
actaaacaattagagaaagcagaattagcaccggaagagggcggtatgcgcctcaatcaa
atggtgatgaccaatattaagtgcccgacttgcggtcgtccaatggggatccgtaccggc
acaacaggggtattcctcggttgttctggttacgagttgccaccaaaagagcgctgcaaa
accaccatgaacttaacgccaggcattgaagcgatcagcgatagtgaagatgccgaaacc
gatgcattgcgtgccaagcaccgctgtggtatttgcggcacggcgatggacagttatctt
atcgacgaaaaacgcaaactgcatgtttgtggtaataaccctgtttgtgaggggtatgaa
gtcgaagaagggcaatttaagatcaaaggttacgaaggcccattaatcgaatgtgaccgc
tgtggtcatgatatggaactgaaaaacggtcgttttggtaagtacttcggttgtacgaat
gcggaatgcaagaatacccgtaaattactgaaaaacggtgaagcggcgccaccaaaagaa
gatcctatttacttaccagagctgaaatgtagcaagtcggatgcgcactttgtgctgcgt
gacggggcggcagggatattcttagcggccagtaccttccctaaatcgagggaaacccgt
gcgccactggttgaagaattagtgaaataccgtgaactcttatggccaaagtatcagtat
cttgctgatgcacctatcgccgatgatgacggcaataaggctgcggtgaagtttagccgt
aaaaccaaagagcaatatgtggcgacggaagtcgacggtaaagccactggatggtccgcc
cattatgttaatggtaaatgggtaagtgaatcatcagcgaagaaagcgaagaaataa
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