Shewanella sp. FDAARGOS_354: CEQ32_03115
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Entry
CEQ32_03115 CDS
T04944
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03030
DNA replication
shf03430
Mismatch repair
shf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CEQ32_03115 (holB)
03430 Mismatch repair
CEQ32_03115 (holB)
03440 Homologous recombination
CEQ32_03115 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shf03032
]
CEQ32_03115 (holB)
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_03115 (holB)
Enzymes [BR:
shf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CEQ32_03115 (holB)
DNA replication proteins [BR:
shf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CEQ32_03115 (holB)
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CEQ32_03115 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
Motif
Other DBs
NCBI-ProteinID:
ASF14124
LinkDB
All DBs
Position
666229..667185
Genome browser
AA seq
318 aa
AA seq
DB search
MVVQSGFDVLTLPWLDAPRQAFLTQLQTQKVPHAQLVGIDSAYGGELLSVFMARAAMCSQ
PTPAGGCGFCKSCQLFDAGNHPDFYQIEADGHQIKVDQIRELCSRLSATAQQSGRRVAII
HHSERLNSASANALLKTLEEPGKDTLLLLHSDTPARLMATISSRCQRLPFVTPSKMLIKN
WLIQQCQIQEDVTWCLSVVGGPLKLAESLQSDGTQPSRYQALLGFRKDWAQSLSSGHLCA
SLLTISEQQIIDALKVLYLLLRQVLLKYGDQDAFVQAQIGNLAAKIMGMCHSLSAMPSVN
YLGLCQSYVLEYKEITNK
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggtagtgcaaagcggttttgatgtattaaccctgccttggctcgatgcgccaaggcag
gcgtttttaacccagttgcaaactcaaaaagtccctcacgcgcaactcgtgggtatcgat
tctgcctatggcggtgaacttttgagtgtgtttatggcgcgcgccgccatgtgttcacaa
cccactcccgcgggcgggtgcggtttttgtaagtcctgccagttatttgatgcgggtaat
catcctgatttttatcaaatcgaggccgatggccatcaaatcaaagtcgatcaaattcgt
gagctttgtagccgcttaagtgcgactgcccagcaaagtggccgccgtgtagccattatc
caccatagcgagcgtttaaactcagcctctgccaatgcgctactcaagacgctcgaagag
ccgggtaaagacaccttactactattacattccgacacacccgcacgtttaatggccacg
atcagtagtcgttgtcagcggcttccctttgtgacgccgtctaaaatgttgatcaaaaac
tggttaattcagcaatgccagatccaagaggatgtgacttggtgcttgagtgtggtcggt
ggcccattaaagttggccgaaagtttgcaatctgacggtacgcaacccagtcgttatcaa
gccttgttagggtttcgcaaagattgggcgcaaagtttgtcgtcgggccatctgtgtgct
agtttgttaacgataagtgaacaacaaatcattgatgctcttaaggttttatacttactc
ctgagacaagttttattgaagtacggcgaccaagatgcgtttgtgcaagcgcaaataggg
aacttggcggcgaaaatcatgggaatgtgtcatagcttaagtgcaatgccgagtgtcaat
tatttaggcttgtgtcaaagttatgtcttagaatataaagaaataacaaataagtaa
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