Shewanella sp. FDAARGOS_354: CEQ32_03505
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Entry
CEQ32_03505 CDS
T04944
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CEQ32_03505 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_03505 (recB)
Enzymes [BR:
shf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CEQ32_03505 (recB)
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CEQ32_03505 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AVL27103
LinkDB
All DBs
Position
complement(759870..763670)
Genome browser
AA seq
1266 aa
AA seq
DB search
MSELSNNMILPTTSQALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEP
LSCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPESERAIAL
RRFDLALKSLDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREA
CYPLPEYLAQIIASEFGDPDGLVKQLRALLGASEAKPLKPVQPFTRLAESLSQSVQRFKL
AWPRGRDALLELLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFIAFGHGLPPLKVLEALS
LSELKLNKGGVLPSASEAPLLDHMEQLAALINAIKPAFLYSAKQGISERFAKQKQQKNVL
TPDDLLTTLAAAMQANPDTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGLEAQ
GSTAVEPKDRSDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHYFLDTNYRSSRN
LVAGVNHLFAQHPNPFISQSIPFDRVKTPASAAAKQLVDSTANSAALRLKLLREGETGLN
KASARQTLAEDTAAEITRLLTQAANGQCHTPKGPLIAKDIAILVRDRNEAAVMKTALSKR
QIGAVFLSRDSVFDTVEAREMALILRALASPKDERALRSALATALLGYSAEQIHAFNQDE
EQRQMLLEQFFALHQIWQKRGIMPALLSLANATHMVARLLQTPSFTATADQDSEEPDEAS
NGERRLTDFRHLAELLQQKATEIDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIV
TIHKSKGLEYPVCFIPFVSLARDNRRRPTPMLYHRTDADGAQELVWDIEGTDEGWEQAKQ
ETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKAGIKSQLHETAIGYLLGITDADCDFAR
LHNAAQALLNGVESNAQAISVECVADNIADSKLHTGEMQSHTLNARNVTRQYRTPWRVGS
YSGLVKNAPHAKASPGADDEVSAVFGAEPANSLSESSWQDSADVPQLPLLNRFSFERGAN
AGSFMHLVLELIDFTQAQTDLPRELPKAMLQYGIAPEWQSVLEDWYLEVLQAPLALMAQD
NQLINPELCLAALAPQHTLVEMEFYLPLNRLKDAELNQLLGQFRYDTALHFDELQGMLKG
FIDLTFEYQGKFYIADYKSNHLGDTIQAYHYGALKQAISDHRYDLQYILYSLALHRYLAM
RLPNYDYDTHIGGCYYLFLRGMSVQYPGFGVYYDKPPKALILALDALFNRSQDESHMSQH
NTGAMA
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaactatcaaataatatgatccttcctactacatcacaggcgctgccgttagat
ccgctcaccctgccatttggtggtagccgattgatagaggccagtgcgggcacaggtaaa
acctatacgatttcgggcttgtatctgcgactactgcttggggatggcttaagcgaacca
ctgagttgcgaacaaattctggtagtaaccttcaccaatgccgccaccgaagaattaagg
gacagaattcgccgccgtatacaagtggcttttaagtgtttcttagggctcgaaattaac
gatccctttgtacaggcgttgtacgataaaaccccagaatctgagcgcgcgatcgccctt
agacgcttcgacttggcgctcaaatccctcgacgaagcggcgatttttaccattcacggt
ttttgccaacggatcttagccgatctcgccttcgaatcctctttactgttcgagtcagat
tttaccttagacgacagcgagtttttgcaccatgcggtacgggacttttggcgtgaagcc
tgctatccgctgccggaatatttagcccagattattgccagcgaatttggcgatcccgat
ggcttagtcaagcagcttcgagccttgctcggtgccagtgaggcaaaaccgcttaaaccc
gtgcagccctttactcgtttggctgagtccttaagccagagtgtgcagcgctttaaactc
gcctggccgcgtggccgcgacgcgctgttagagttacttcatagcctgccgcttaatggc
cagcgctttggtaaagcgagcgacaattaccccaaattggcggaaatgttcgaccaattg
gacaactttatcgcctttggtcacggcttaccgccgctaaaagtgcttgaggccttgtca
ctctcagagcttaagctcaataaaggcggtgtactcccaagtgccagtgaagcaccactg
cttgaccatatggagcaattagccgcgctgattaacgcgattaaacccgcatttctctat
agcgccaaacaagggatcagcgagcgctttgccaagcaaaaacagcagaaaaatgtgctg
acacccgatgacctgctcacaaccttggcagcggcgatgcaggccaatccagacacttta
cctaaggctgtggcgagtcgcttccccgtggccttaatcgatgagttccaagatacggat
cctctgcaatttgcaattttctcagggatttatcaaacccgtttggggcttgaagctcaa
ggttcgacggctgtcgaacctaaggatcgctcggatagcaaattaagcctgctgatgatt
ggtgaccctaaacaagcgatttatgctttccgcggcgccgatatttacacctatatcgag
gcgcgcagacaaacccaagcacactattttctcgacactaactatcgctcgagtcgtaat
ctggtggcgggagtgaatcatctatttgcccagcatcccaatccttttattagccaatcg
attccctttgacagggtaaaaacacccgccagtgcggcggcaaaacagttagtcgatagt
acagccaatagtgccgcactgcggttaaaactgttacgcgagggcgaaacggggctgaat
aaagccagcgccagacaaaccttggccgaagataccgccgccgagatcacccgtttactc
acacaggccgccaatggacaatgccatacgccaaaagggccgttaattgccaaagatatt
gccattttagtgcgggatagaaacgaagctgcggtcatgaaaacggcgctcagtaaacgc
cagattggcgcggtatttttaagccgcgatagtgtgtttgataccgttgaagcgcgggaa
atggcgctcattctgcgcgcattggccagtcccaaggatgagcgcgccctgcgcagcgct
ctcgccaccgcgctacttggctatagtgccgagcaaattcatgcctttaaccaagatgaa
gagcagcgccaaatgctgctcgagcagttttttgcgctacatcagatctggcaaaagcgc
ggcattatgccggcgctgctgagcttagccaacgctacccatatggtggcacggctactg
caaacacccagctttacagccactgccgaccaagatagcgaagagcccgatgaggcgagt
aatggcgagaggcgactaacagattttcgccacttagccgagctgttgcagcaaaaggcc
actgagattgatggcatcagtgccctactcaattggtatgagcagcaactaattgataat
acagggacagatgagcagcagcttcgccttgaaagtgagcaaaatctggtgcaaatcgtg
actatccataaaagtaaggggctggaatacccagtgtgttttatcccctttgttagcctt
gcacgggataatcgccgccgcccgacacccatgctctatcacagaaccgatgcggatggg
gcacaagagctggtatgggatattgaaggtacagacgaaggctgggagcaggcaaagcaa
gaaaccttagccgaagatcttcgtctactttatgtggcgctcacccgccccgtatatttg
tgttatttgtacatcgctaaccatagccggatgttaaaagccgggatcaaaagccaactg
catgaaaccgctatcggttaccttttaggcattaccgatgccgactgtgattttgctcgt
ctgcacaatgcggcgcaggcgctacttaatggtgtagagtcgaatgcgcaagcgatcagc
gttgagtgtgttgctgacaacattgctgatagcaagctgcacacgggtgaaatgcaatcc
cacaccttaaatgcccgtaatgtcacccgtcagtatcgcaccccatggcgagtaggcagt
tattcaggtttagtcaaaaatgcaccccacgccaaagccagtccgggcgccgatgatgaa
gttagcgcggtatttggcgcagaacctgccaatagcctaagtgaatcctcatggcaagat
agcgctgatgtgccgcagctaccgctactcaatcgctttagctttgagcgcggcgccaac
gcggggagttttatgcacttagtgcttgagttaattgattttacccaagctcaaaccgac
ttaccgcgagagctacctaaggctatgttgcaatacggtattgcccccgaatggcaaagt
gtattagaggattggtaccttgaggtcttacaggcaccgctggcattgatggcgcaggat
aatcagctcatcaatcccgagctgtgtttagccgcgctcgcgccacaacacaccttagtg
gagatggagttttacctgcctttaaatcgattaaaagatgctgagctgaatcaactcctc
gggcaatttcgttacgataccgcgctgcattttgatgaattacagggcatgctcaaggga
tttatcgacttaacctttgaatatcaaggtaagttttatatcgccgactataaatcaaac
catttaggcgacacgattcaggcctaccattatggtgcgcttaagcaggcgattagcgat
cataggtacgatttgcaatatattctctactccctcgccctgcatcgatatttggcgatg
cgactgccaaactatgactacgatacccatatcggcggctgttattacttgtttttacgg
ggaatgtcggttcagtatcccggctttggggtttactacgataagccacctaaggcgctc
attctcgccttagatgcgctgtttaaccgcagccaagatgaaagccatatgagtcaacat
aatacgggagcgatggcatga
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integrated database retrieval system
