Shewanella sp. FDAARGOS_354: CEQ32_04730
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Entry
CEQ32_04730 CDS
T04944
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ32_04730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shf03019
]
CEQ32_04730
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_04730
Enzymes [BR:
shf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEQ32_04730
Messenger RNA biogenesis [BR:
shf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ32_04730
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CEQ32_04730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SWI2_SNF2
TniB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASF14396
LinkDB
All DBs
Position
complement(1029527..1031494)
Genome browser
AA seq
655 aa
AA seq
DB search
MSYSAPQPDDVSTLIPLLQQQFGFAGFRQGQGEVISQLLAGQSSLAIFPTGSGKSLCYQF
TALQLPHLTLVVSPLLALIKDQLSFLQQKGIKAASIDSTLTPEMTQQVMREARSGELKLL
MVSVERFKNERFRQFIQSIPISMLVVDEAHCISEWGHNFRPDYLKLPDYRRELAIPLVLL
LTATATRKVKLDMAARFDIKPQHIVQTGFYRANLDLTVLPVASQHKLAALQQQLQHVIGA
GIVYVTLQHTAEEVAAELCRMGFEASAYHAGFEDEKRQQIQQDFMQGNINIVVATIAFGM
GIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGINTVENFVYGDTPE
LASIKAVINNIREETHNGRWELQLHQLSTVSNIRQLPLKTLLVQLEMQGIIKPLYAYYAD
IRYRFIVPQEQFLHQFSPERQAFLTDIFAHTQMKRIWGSLDFSSLYQATGAERTRVMAAL
EYLASQQLIELETKQVTDVYQVDEQGLVQENRAEQLYQYFADKEVKEIARIAQLVRFFEL
TTCLNYNLARYFDDNAAPQSCGHCSVCRGQVAKLTYSEELIWPDDTQICADLNELKLAAE
AKGLAPLSLDTQCQFLAGLTQPILTRLQARKLQGFGRLEKCRYADIKQKLEKAGT
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtcttattcagcacctcaacccgatgatgtatcaaccttgataccactattacagcaa
caatttggctttgcaggatttagacagggtcaaggtgaggttatctctcagctattagct
ggccagtcgagcctggcgatttttcctactggctcaggaaaatcgctctgctatcaattt
accgcgctacaacttccccatttaaccttagtggtttcgccattgttggctttgattaaa
gatcaattaagttttttacaacagaagggcattaaagcggcgagtattgattcgacctta
acaccagaaatgactcaacaggtgatgcgtgaggctcgctcaggcgagttaaaattgcta
atggtttcggtggagcgatttaaaaatgagcgatttaggcaatttattcaatcaattccg
atctctatgctagttgttgatgaagcacactgtatctcagaatggggacataattttcgc
cccgattatttaaaactccccgattatcgccgtgaattagcgattccattggtgctgtta
ctcacggccactgcaacacgtaaagtaaagcttgatatggcggcgcgttttgatattaag
ccacaacacattgttcaaacaggcttttatcgtgctaacctcgacttgacagtactacct
gtagcaagtcaacacaagctggcggcactacaacagcagttacaacatgttatcggtgca
ggaattgtctatgtgactttgcagcatacagcagaggaggtggccgctgaactttgccgt
atgggatttgaagcaagcgcctatcatgctgggtttgaggatgagaaacgccagcaaatt
cagcaggactttatgcagggcaatatcaacatcgttgttgcgaccatcgcctttggaatg
gggattgataaaagcaatattcgttttgtgatccactatgacttaccaaaatctattgaa
aattactgccaagaaattggccgcgcagggcgtgatggacaactttcccattgcgtcact
ttagccaatttggatgggatcaacactgtcgaaaactttgtttatggcgatacgcctgaa
ctggcaagtattaaggctgtaattaataacattcgcgaagaaacccacaatggacgttgg
gaactgcaacttcatcaactgtcaactgtgagtaatattagacaactccctctgaaaacg
ttactcgtgcagcttgaaatgcaaggcatcatcaaaccactttatgcctattacgccgat
attcgttaccgttttattgtgccgcaagagcaatttttgcatcagttttcacccgaacgg
caggcatttttaactgatattttcgcccacacccaaatgaagcgcatttggggcagtttg
gatttttcttcactgtatcaggctacgggggctgaacgaactcgagtaatggctgcgtta
gaatatcttgcgagtcagcaactcattgaattagaaacaaagcaagtcaccgatgtctat
caagtcgatgaacaaggcttagtacaggaaaaccgagcagagcagctctatcaatacttt
gctgataaagaagtaaaagaaattgctcgcattgcacagttagtacgattttttgagcta
acgacttgcttaaattacaatttagctcgctattttgacgataatgcagcaccccaatcc
tgtggtcattgcagtgtttgtcgtggccaagtggctaaattgacctattctgaagagcta
atatggcctgatgatacgcaaatttgtgccgatttaaacgagttaaaactcgcagcagaa
gccaaaggcttagcacctttgtccttagatacccaatgccagtttttagcaggcctgact
caacccattttgactcgtttgcaagctcgcaaactccaaggtttcggacgtttggaaaaa
tgtagatacgccgatatcaagcaaaagctagaaaaagcgggtacttaa
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