Shewanella sp. FDAARGOS_354: CEQ32_11980
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Entry
CEQ32_11980 CDS
T04944
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
shf
Shewanella sp. FDAARGOS_354
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shf03009
]
CEQ32_11980
Enzymes [BR:
shf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CEQ32_11980
Ribosome biogenesis [BR:
shf03009
]
Prokaryotic type
rRNA helicases
CEQ32_11980
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
Helicase_C_2
AAA_19
U-box
CMS1
AAA_22
YlmH_RBD
Motif
Other DBs
NCBI-ProteinID:
ASF17641
LinkDB
All DBs
Position
complement(2650557..2651933)
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AA seq
458 aa
AA seq
DB search
MAFLTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL
NKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHG
AHIIVGTPGRIVDHLDRNRLDLSNLSMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLL
FSATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKP
ESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVA
ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLD
REITSESLPSLSLLGSAPNAPTMITLQIDGGKKEKLRPGDILGALTGDNGIEGTQVGKIL
VTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
ctggctttcttgacccttaagctaaaaaccgaactgcttgagaacctttcttctatgggc
tacaacgagatgacgcccattcaggcgcaaagcttgccagccattttagcgggcgaggat
gtgataggtcagggtaaaacggggtcaggtaaaacggcggcctttggtctaggtttacta
aataaattagacgttaagcgttttcgcattcaaaccttagtgctgtgtccaacccgcgag
ttggccgaccaagtggcgcaggagatccgtactctcgcccgtggtatacacaacgtgaaa
gtattaaccctgtgtggtggtgtgccaatggggccgcaaattggctctttagagcatggt
gcccatattattgtgggaaccccggggcggattgtcgatcacttagaccgcaatcgttta
gatttaagcaatctaagtatgttagtgcttgatgaagctgaccgtatgctcgaaatgggg
ttccaacctcagctcgatgcgattattgaacagtcaccacgcgagcgccaaacgctgctg
tttagtgcaacattccctgagcaaattcaatcgattgctaaacaaatcatgtataaccct
gtgatggttaaggccgcggttacccatgaaaaaaataccatcgaacagcatttttatcag
ttagatgacgataagtcgcgcatgcaagcgctgcaattattactgttagaacataagcca
gaaagtgccgtggtgttttgtaataccaagcgtgaaacgcaaaaagtggccgacgaactc
gagggtttaggctttagtgtcttggccttgcacggcgatttagaacagcgcgatagggac
gaaaccctgttgcaatttgccaacaagagcgcctgcgtgctggtggctaccgacgtggcc
gcccgtggtttagatattgatgcgctagatgccgtatttaactaccatgtggcctacgat
accgaagtgcacattcaccgtatcggccgtactggccgtgcgggcagtaaaggcgctgct
tataccttttacaacgatcaagacggttacaagatcgccttactagaagagtacttagat
cgagaaattaccagtgaatcactgccatcattaagcttgcttggcagtgcgcctaatgcg
ccaaccatgatcactctgcaaatcgatggtggtaaaaaagagaaacttcgccctggtgat
attcttggcgccctgaccggtgataatggcattgaaggtacgcaggtgggcaagatcctc
gtgaccgactatcgtgcttatgtggcggtaaaccgtaaagtggctaaaaaggcactgagc
aagatcaccagcggccgcattaagggtaagtcttaccgcgcgtggttgatgaaataa
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