Shewanella sp. FDAARGOS_354: CEQ32_13755
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Entry
CEQ32_13755 CDS
T04944
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03420
Nucleotide excision repair
shf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEQ32_13755
03430 Mismatch repair
CEQ32_13755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_13755
Enzymes [BR:
shf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEQ32_13755
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CEQ32_13755
MMR (mismatch excision repair)
Other MMR factors
CEQ32_13755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
ASF15943
LinkDB
All DBs
Position
complement(3050338..3052506)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQL
RLLKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQERFKHILVDEFQDTNAIQYAWIRVLAGQT
ANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPTATTIRLEQNYRSKGNILKASNALIANN
PERLGKELWTDEADGEPISLYCAFNEMDEARFIVGRINDWYEKGGNLSDCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIGD
RTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVSGFMDLIVTLQEETQDMALYRM
TDTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMPEELEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLCY
VGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRFS
AQKSAVANDTGFSVGQRVHHPKFGDGKVTNFEGSGAQARVQVNFSDFGSKWLVVAYARLE
AR
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactagacggcctgaatgataagcagcgcgaggctgtcgcggca
ccgcaatctagcatgttagtgcttgcgggggcgggcagtggtaaaacgcgggtgttaacc
caccgtatcgcgtggttaatgcaggttgaacagcagagtccttactcgattttagccgtg
acgtttaccaataaagctgcggccgagatgcgtgagcgggttgaaaaagtcgctggcacc
aatatggggcggatgtggattggcaccttccacgggctggcgcatcgtttattacgcact
cacttccaagatgcgggtttaccgcaaagcttccaaattcttgattcagacgatcagctg
cgcttgctgaaacgcatccttaaaagtttgaatctggatgaaaaacaatatcctccccgt
caggcgcagggttatatcaatggtaaaaaagaccaaggattaagaccaaaacatatcgat
gcgggtggttttccgattgaacagaatctactgaaaatttatcaggtttatcaagagtct
tgcgatcgcgctggccttgtcgactttgccgaaatcctattacgtgcccacgagctttgg
ctcaataagccgcatttgctggcacattatcaagagcgctttaagcatattctggtagac
gagttccaagataccaacgccattcaatatgcctggatccgcgtgctggccggccaaact
gccaatgtgatgatagtcggtgatgacgaccaatctatttacggttggcgtggcgctcag
gttgaaaacctgcaccgcttcctgaaggatttccccacggcgaccacgattcgcctcgaa
caaaattatcgctccaagggcaatattttgaaggcgtcgaacgcccttattgccaataac
cccgagcgtttaggtaaagagctgtggaccgacgaagccgatggtgagccgatttccctc
tactgcgcctttaacgaaatggacgaggcgcgctttattgtcggccggatcaatgattgg
tacgaaaaaggcggcaatttaagtgattgcgcgattttatatcgctcaaatgcccagtcg
cgtgtgctcgaagaagccctattacacaaaggcttagcctatcggatttacggtggcctg
cgcttcttcgaacgccaagagattaaagacgctatgggttatatgcggctaatcagcaat
aaaaatgacgatgccgccttcgagcgcgtggtgaatacgccgccccgtggcattggcgat
cgcactctagatattttacgcactaccgcgcgtcagcaagagctcacgttatggcaggcc
tgtttacggctgctggatgaaaaagtgcttgcgggccgcgcagcctcagcggtgagtggc
tttatggatcttatcgtcaccctgcaggaagaaactcaggatatggcgctgtaccggatg
acggacacagtgatccaagcctctggcctcaaagccatgtacgaagcggaaaagggcgaa
aaggcccacgctcgtatcgaaaacttagaggaactcgtcaccgccgcgcgcaccttcgaa
atgcctgaagaactcgaggatatgggtgagcttaacgcctttttatcccatgcggcctta
gaggcgggcgaaggtcaggccgacgcctttaccgatgcggtgcaactgatgacactgcac
tcggccaaggggctggagtttactatggtgtttatggcgggtgtcgaggaggggattttc
ccgagtaagatggcgctcgaagagggcgacagactcgatgaggaacgccgactctgttac
gtgggcatgacccgcgcgatggaaaaactctatatcacctatgccgagtcccgccgtatt
tatggccgtgaagattacgcccgtccatcgcgttttattaaggaaatcccgccgcaatat
gtggacgaaattcgcttaaaggcgcaggtgtcgacgccgatggccaataatcgcttcagt
gcgcaaaagtcggcggtcgccaacgatactggctttagcgtcggccaaagagtgcatcat
ccaaagtttggtgacggcaaagtgactaactttgaaggcagtggcgcacaggcgcgggta
caggtgaattttagtgattttggcagtaagtggctggtggtggcttacgcgcgcttagag
gcgcgttga
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