Shewanella sp. FDAARGOS_354: CEQ32_14065
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Entry
CEQ32_14065 CDS
T04944
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ32_14065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shf03019
]
CEQ32_14065
Enzymes [BR:
shf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEQ32_14065
Messenger RNA biogenesis [BR:
shf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ32_14065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
ASF16000
LinkDB
All DBs
Position
complement(3127883..3129202)
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AA seq
439 aa
AA seq
DB search
MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSTPIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYG
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWAWLEGDGHRVGLLTGDVPQKKRIRILE
QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA
CEEYALNLPAIETYINHSIPVSNYDRDALLDDIPQPAKIHRKHPAGARNLRERSGVSRTQ
GAHRSGGRPPRHDRTRRQP
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaacacatttatcaaatcaaaaatttgccgacttacctctgcatcctgaggtt
aaacaggcccttgccgagaacggctttgaattttgtacgccgattcaggcgttatcatta
cccgtattacttcaatcaaaagatatcgctggccaagctcagacgggcactggcaagact
atggcgtttttggttgccacatttaaccatttattgtcgaccccgattcctgaaggacgt
caattaaatcaaccgcgtgccattatcatggcgcccacccgtgaattagccattcaaatt
gctaaggacgcgattttactcgcgaaacatactcgcttaaaggtggggattgtttacggt
ggtgagagttacgacgtccaacgtaaagtgctagaccaaggtgttgacatcttaatcggt
acaaccggacggattatcgattatgtgcgtcagggcattattagcttaaatgcgattcaa
gccgtggtgttagatgaagccgatcgtatgttcgacctcggttttatcaaggatattcgt
ttcttattccgacgcatgcctaatgccgatcagcgcctgaacatgttgttttcagcgacg
ctttcaatgaaggtgcaagagttggcttatgatcatatgaatgatccggtgaaagtcgaa
attgcccccgaagaaaaaacctcaaagaatatcaaagaagaaattttctatccttcccaa
gaagataagatgcgtttattgctaacgctgattgaagaagattggcctgagaaagccatt
gttttttcaaacactaagcatagctgtgagaacttatgggcttggcttgagggtgatggt
caccgtgtgggtttgctcactggggatgtgccacagaagaaacgtattcgaatcctagag
caatttacgcaaggtcaattagatatcttggttgcgactgacgtggctgcacgcggcctg
catatctccgatgtttcccatgtttacaattatgatttaccagatgattgtgaagattac
gtccaccgtattggtcgtactgggcgagcgggtaacaaaggggtatcagttagttttgcc
tgtgaagaatacgcactaaacttgccagcgattgagacttatattaatcactcaatccca
gtgagtaattatgaccgcgatgccttactggatgatattccacagccagctaagattcat
cgtaaacatccagcgggagctcgtaatttacgtgagcgctctggggtgagtcgtactcaa
ggtgcacatcgtagtggtggtcgtccacctcgccatgacaggacgcgtagacagccttaa
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