Shewanella sp. FDAARGOS_354: CEQ32_14245
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Entry
CEQ32_14245 CDS
T04944
Name
(GenBank) AMP-dependent synthetase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf00061
Fatty acid biosynthesis
shf00071
Fatty acid degradation
shf01100
Metabolic pathways
shf01212
Fatty acid metabolism
shf02024
Quorum sensing
shf04146
Peroxisome
Module
shf_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
CEQ32_14245
00071 Fatty acid degradation
CEQ32_14245
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
CEQ32_14245
09145 Cellular community - prokaryotes
02024 Quorum sensing
CEQ32_14245
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
shf01004
]
CEQ32_14245
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shf04147
]
CEQ32_14245
Enzymes [BR:
shf01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
CEQ32_14245
Lipid biosynthesis proteins [BR:
shf01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
CEQ32_14245
Exosome [BR:
shf04147
]
Exosomal proteins
Exosomal proteins of breast milk
CEQ32_14245
Exosomal proteins of breast cancer cells
CEQ32_14245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
AMP-binding_C
SH3_1
Motif
Other DBs
NCBI-ProteinID:
ASF16033
LinkDB
All DBs
Position
3169989..3171653
Genome browser
AA seq
554 aa
AA seq
DB search
MDKAIKTPIEMLAHWANTRGDEIYLRQPIKGQYLDFTWNEVQEKVQQLAGALRHLGLEPG
DKIAVLSKNCAEWFITDLALMHGGYISVPIYPTANPDTIRYVLQHSGAKAIVLGKLDHWA
DQEAGVGGELLRLAMPYDTMPAQYQWEQLLNMGNPLIEAPLPEPDQIMTLIYTSGSTGQP
KGAIQTYASYGWTCQAVVRDLRTDGKDRLLSYLPLAHITERVAIEGSSFYSGSTVAFVES
LDSFVADVQRAKPTVFFSVPRLWSLFQKNIIDKIGVGKLNLLLKIPLISSLVKHKIHKGL
GLNHCRLLGSGSAPIPPSLIHWYHSIGLDICEAWGMTENCAYSIINYPFDARKIGTVGKP
VQDCQIRQGEDGELLIKSPGLMTAYYLQPEATAAAFDADGFFHTGDLCAIDADGCVTITG
RVKDNFKTAKGKYVAPVPIERKLAQDPHVELICVIGSGLPHPVALVQLSEGANLQAREEV
RASLKATLDSVNPHLESHEHVDAIVVVSEPWTIENDVLTPTLKIKRHVLEKAFSERVDGI
RGAQVRWEDELVAK
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggataaagcgattaagacgccaattgaaatgctggcgcactgggcgaatacgcgtggg
gatgagatttatttgcgccagccaatcaaggggcaataccttgatttcacttggaatgaa
gtacaagaaaaagtccaacaacttgctggcgcgttgcgtcatttaggcttagagccgggc
gataagattgccgttctgtctaaaaactgtgccgaatggtttatcaccgacctcgccctg
atgcacggcggctatatcagcgttcctatttatccgactgcgaatccagataccattcgc
tatgtattgcagcatagtggggctaaagcgattgtcctcggtaagctcgatcattgggcc
gatcaagaagccggtgtcggcggcgaattgctgcgtctcgccatgccctacgacaccatg
ccagctcaatatcaatgggaacaattgctcaatatgggcaacccattgattgaagcgcca
ttacccgaacccgatcagataatgacgctgatttatacctcgggctcaacgggtcaacct
aaaggtgcgattcaaacctatgctagctatggttggacttgccaagcggtggtgcgcgat
ctacgtacagatggtaaagatagattattgtcctacttaccgttagcccatattaccgag
cgcgtggcgattgaaggctcatccttttattccggcagcacagtcgccttcgtcgaaagc
ttagactccttcgttgcggatgtgcagcgcgctaaaccaacggtgtttttctccgttcca
cgcctgtggagcctgttccaaaagaacattatcgacaagattggtgttggcaaactcaat
ctattgctaaaaattccactgattagcagcctagtaaaacacaagatccataagggctta
ggactcaaccattgccgtttactcggctctggctcagcgcctattccaccctcactcatc
cactggtatcacagtattgggctggatatttgtgaggcttggggcatgacagaaaactgt
gcttactccatcatcaactaccctttcgatgcgcgtaaaatcggcactgtgggtaaaccc
gtgcaggattgccaaatccgccaaggtgaagatggcgagctactcattaagagcccaggc
ctaatgaccgcctattatctgcaacctgaagccaccgcggcggccttcgatgctgatggt
ttcttccataccggcgatctctgcgccatcgatgccgatggttgtgtgactatcaccggc
cgcgtgaaagacaactttaaaaccgctaaaggcaaatatgtggcaccagtgcccattgag
cgcaagcttgcacaagatcctcatgtggagctgatttgtgttattggatctggtttgccg
caccctgtagccctagtgcaactctctgagggagctaacctacaagcccgtgaagaagta
cgcgcttcccttaaagcgacactcgatagtgtgaatccacatttagaatcccacgaacat
gtggatgccattgtggtggtgagtgaaccttggaccatcgaaaacgatgtattaaccccc
acactgaagatcaagcgccacgtgcttgagaaagcctttagcgaaagggtggacgggatc
cgtggtgctcaagtacgctgggaagatgagttagtcgcaaaataa
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