Shewanella sp. FDAARGOS_354: CEQ32_15920
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Entry
CEQ32_15920 CDS
T04944
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CEQ32_15920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_15920
Enzymes [BR:
shf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CEQ32_15920
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CEQ32_15920
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CEQ32_15920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF1631
Motif
Other DBs
NCBI-ProteinID:
ASF16345
LinkDB
All DBs
Position
3567621..3568436
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AA seq
271 aa
AA seq
DB search
MPELPEVEVTRQGIAPYLVEQTVVDLVVRNASLRWPVPELAKQIIGQTIRQVRRRAKYLL
IDTDAGTSIVHLGMSGSLRILPHDTPVEKHDHIDLVLANGRILRFNDPRRFGAWLWCQLP
EEAHPLLEKLGPEPLTDAFNVNQLAAALAGKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPEAEAGKIDIERLTVLVVEVKQILAHAIKQGGTTLKDFTNAEGKPGYFAQKLHVYGR
GGETCTQCGNLLSEIRLGQRTTVFCGICQTR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaagtcgaagtcacccgtcagggcatagccccatatcttgtcgaa
caaaccgtggttgacctagtagtccgtaacgcctcactgcgttggcccgttcccgaactt
gccaaacagatcatcggccaaaccatacgccaagtgcgccgccgcgctaaatatctgtta
atcgataccgatgccggcaccagcatagtgcatttggggatgtcgggcagcctaaggatc
ctgccccatgacacgccagtggagaagcacgaccatatcgatcttgtcctcgccaatggc
cgtattctgcgctttaacgatccgagacgtttcggcgcctggttatggtgccaattgcca
gaggaagcccatccactgctagaaaaactcgggccagaacctctgaccgatgcctttaac
gtcaatcaattagctgccgcgctggcgggcaagaaaaaggccatcaaactctgcctgatg
gataaccatattgtggtgggtgtgggaaatatttacgccaacgaagccctgtttgccgcc
ggaatacaccccgaggcggaagcgggcaagatagatattgaacgcttaacggtactggtt
gtcgaggtcaaacaaatcctcgcccacgccatcaagcagggtggcactacgcttaaggac
ttcaccaatgccgagggtaaacccggctatttcgcccaaaagctgcatgtttacggccgc
ggcggcgaaacctgcactcagtgcggcaatctactcagcgaaatccgccttggtcagcgc
accacagtgttttgcggcatctgccagacgcgttaa
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