Shewanella sp. FDAARGOS_354: CEQ32_17225
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Entry
CEQ32_17225 CDS
T04944
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CEQ32_17225 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shf03021
]
CEQ32_17225 (rpoB)
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_17225 (rpoB)
Enzymes [BR:
shf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CEQ32_17225 (rpoB)
Transcription machinery [BR:
shf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CEQ32_17225 (rpoB)
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CEQ32_17225 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ASF16567
LinkDB
All DBs
Position
3851472..3855509
Genome browser
AA seq
1345 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMT
LVPERLRGETASYDIKDAEGTVLVEAGRRVTARHIRQLEKTNTTELEVPVEYIVGKYAAQ
DYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDPTTNR
LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGV
LSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVI
TDEVEYLSAIEEGRYVIAQANIEVDSEGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGANMQRQAVPTLKSEKPLVGTGIERTLAVDSGVVVAAK
RGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEMHIAQARKD
LGEEFKILEEGVLSRARNLLLSAGFTEAQIAALPRKDVLVQVIDDEAKQTELEQLAEQHE
ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
NPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGNKIAAMLEDQREKG
LAEVRNYIKQVYELGDEVQQRVDIDSFTDDELLRLANNLKGGIPVATPAFDGAKEKEIKQ
MLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ
PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQP
GMPESFNVLLKEIRSLGINIELDQE
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattctgaaaagaagcgtattcgcaaagactttggtaagcgtccacag
gtgttggatattccttaccttttgtctattcagttagactcttttaagaagttcaccgat
caagatcctaccggtgagcgcggtcttgaagccgccttccgtagcgtttttcccatcaag
agcttttctggtaattcagaactgcaatacgtcagctataagcttggcgagcctgttttt
gatgtgaaagagtgtcagatccgtggtgttacatattcagctccactgcgcgttaaatta
cgcatggtgttgtatgaccgtgaagcagcggccggcactgtaaaagatattaaagaacaa
gaagtctacatgggtgatatcccattgatgactgacaacggtacctttgttatcaacggt
actgagcgtgtaatcgtttctcaattacaccgcagcccaggcgtattcttcgatcacgac
cgtggtaaaacccactcatcaggtaaggtgctatataacgcacgtatcattccttaccgt
ggttcatggttagactttgaattcgatcctaaagatgcactattcgtacgtatcgaccgt
cgccgtaaattaccagcgaccatcattctgcgtgcattagagtactctactcaagagatc
cttgacctgttcttcgaacgcgttgagttcaagatcaagaaagatactctggttatgacc
ttagtccctgagcgtctgcgtggcgaaaccgccagctacgacatcaaggatgcagaaggc
actgtattggttgaagcgggccgtcgcgtgactgcacgtcatattcgccaactcgaaaaa
accaacaccactgaactcgaagtaccagttgagtacatcgtgggcaaatatgctgctcaa
gattacatcgatccggacacgggcgaagtattagtttctgctaacagtgaaatcagctta
gaagacttagcgaagttatcactggcaggcatcaaagagttgagcacgttatacattaac
gagctggaccacggtgcttacatctctgacactctgcgtattgatccaaccactaaccgc
ttagaagcgttagttgagatctaccgcatgatgcgtcctggtgagccaccaaccaaagat
gcagcagaagccctgttccaaaacttattcttcagcgaagaacgttatgacctgtcgaaa
gtcggtcgtatgaagttcaaccgtcgtctcagcattcctgatgacgaaggtagtggcgta
ctgtctaaagaagacatcgttgcagtaatgaagaacatcattcacatccgtaacggcttc
gacgaagtggacgatatcgaccacttaggtaaccgtcgtattcgttctgtgggtgagatg
gctgaaaaccaattccgtgttggtctggtccgtgttgagcgcgccgtgcgtgaacgtctg
tcattaggcgatctgaacgagctgatgccacaagacttaatcaacgctaagccaatttct
gctgcagtgaaagagttcttcggttcttctcagctgtcacaattcatggaccaaaacaac
ccgctgtcagaagtaacgcataagcgtcgtatttctgctcttggcccaggtggtttgacc
cgtgaacgtgcaggcttcgaagtccgcgacgtacacccaacgcattatggtcgtttatgt
ccaattgagacccctgaaggtccaaacattggtctaatcaactcattagcaagctttgcc
cgtactaactcatacggcttcttagaaacaccataccgcaaagtggtagacggtgtgatc
actgacgaagtggaatacttgtcagcgattgaagaaggtcgttatgtgattgcacaggcg
aacatcgaagttgactcagaaggccgcatggttgaagagcagatcgcatgtcgtcacaaa
ggtgaatctacctttatgcgcgcatctgacattcaatacatggacgtatcgccacaacag
attatttctgttgctgcgtcactgatcccgttcttagaacacgacgacgcgaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagcggtaccaacgctgaaatcagagaagcctctg
gtcggtacaggtattgagcgcacgttagctgtggactcaggcgtagtagtcgccgctaaa
cgtggcggtgtgatcgactacgttgatgcgagccgtatcgtagttaaagtaaatgaagac
gagctgcgcccaggcgaagccggtatcgacatttacaacctgactaagtacacccgttct
aaccaaaacacttgtatcaaccaacgtccttgctgttctgttggtgagccagtggttcgt
ggtgacgtgttagcagacggtccgtctactgacttaggtgacttagcccttggccagaac
atgcgtatcgcgttcatgccttggaacggttacaacttcgaagactcgatcttaatttct
gagcgtgttgcacaggaagaccgtttcaccactatccacattcaagagctgtcttgtatc
gctcgtgataccaaactaggtagcgaagaaatcactgctgacattccgaacgtaggtgaa
tctgcgctgtcgaaactcgacgagtcaggtattgtttacatcggtgcagaagtgaagggc
ggtgacattctggtaggtaaagtgacgccaaaaggcgaaacacaactgactccagaagag
aagttactgcgcgccatcttcggtgagaaagcgtctgatgtgaaagacagctcactgcgt
gtacctaactctgttaaaggtaccatcatcgacgttcaggtatttacccgtgacggcgtt
gagaaagacaaacgcgccattgaaatcgaagaaatgcacattgcccaagctcgtaaagac
ttaggcgaagagttcaagatccttgaagaaggcgtattgagccgtgcgcgcaacttatta
ttaagtgccggtttcactgaagcacaaatcgcagcattgccacgtaaagatgtattggtt
caagtcattgacgatgaagccaaacaaactgagcttgagcaattagctgaacagcatgaa
gagctgaaagcagacttcgataagaagtttgaaatcaaacgtcgcaaaatcacccaaggt
gatgacttggcgccaggcgtactgaagatcgttaaggtttacttagcggttaaacgtact
atccaaccaggtgacaagatggcgggtcgtcacggtaacaagggtgttatctctaagatt
aacccaattgaagacatgccgtacgacgagcaaggcaaccctgtggacatcgtgttgaac
ccgctaggcgttccatcacgtatgaacatcggtcaggttcttgaagttcacttaggtgct
gcggctaaaggtattggtaacaagattgctgccatgctggaagatcagcgcgagaaggga
cttgcagaagttcgtaactacatcaagcaagtgtacgaattaggtgacgaagtgcagcag
cgcgtcgacatcgattcattcactgacgatgagttattgcgcttagcgaacaacctgaaa
ggcggtatcccagttgctacgccagccttcgacggtgctaaagagaaagagatcaagcag
atgcttgagcttgcaggcttgccaacctctggtcagctgaaattatttgatggtcgtacc
ggtaacgaatttgagcgtccagtaactgttggttacatgtacatgctcaaactgaaccac
ttagttgacgacaagatgcacgcccgttctaccggttcgtacagcttagtaactcaacaa
ccattgggcggtaaagctcagttcggtggtcagcgtttcggggagatggaagtgtgggca
ctcgaagcatacggtgccgcttatacgcttcaagaaatgctcaccgttaaatcggatgac
gttaacggtcgtactcagatgtataagaacatcgtcgacggtaaccatcagatgcagcct
ggcatgccagagtccttcaacgtattactgaaggagatccgttcactcggtattaatatc
gagttggatcaggaataa
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