Shewanella sp. FDAARGOS_354: CEQ32_17230
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Entry
CEQ32_17230 CDS
T04944
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CEQ32_17230 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shf03021
]
CEQ32_17230 (rpoC)
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_17230 (rpoC)
Enzymes [BR:
shf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CEQ32_17230 (rpoC)
Transcription machinery [BR:
shf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CEQ32_17230 (rpoC)
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CEQ32_17230 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ASF16568
LinkDB
All DBs
Position
3855593..3859810
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG
AAELHARVKVRITETVIGDNGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIANW
DPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL
VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCVITSAGDSEFLEGEQVEVSRVKIANRDLIEQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggtgtgatctgtgaaaagtgtggtgtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacattgaactggctagcccagttgcccacatttggttcttgaaatcactg
ccgtcccgtatcggtttaatgctggacatgacgctgcgtgatatcgagcgcgtactgtat
tttgaatctttcgtcgtgatcgagcctggcatgaccagccttgagcgtggccaaatgctg
acagaagaaaactatctggacgcattagaagagtacggtgacgaattcgaagccaagatg
ggtgctgaagcggtattagaactgctgcgcgcaatcgatcttgaaaaagaaatcgaacaa
atgcgtgaagagctgccatcaatcaactctgagactcgtcgcaagaaagtgaccaagcgt
cttaagttgatggaagcgttccacacttctggtaacaagccagagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacgtcagatctgaacgatctgtaccgccgtgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccggacatcatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgcaattaccggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaaacaaggtcgtttccgtcag
aacttgttaggtaagcgtgttgactactcaggtcgttcggtaattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctggaaggtcgtggcttagcgacaaccatcaaagcggctaagaagatg
gtagagcgtgaagtggcggaagtttgggacgttctggatgaagtgatccgcgaacatcca
gtgatgcttaaccgtgcaccaacactgcacagactcggtatccaagcgttcgaacctgta
ctgattgaaggtaaagccatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagccaacggcgagcctgtaatc
acgccgtctcaagacgtggtattaggtctgtactacaccagccgtgagcgtattaacggc
cgtggtgaaggtatgtactttatgtctgttgctgaagttgaaaaagcttatgcaactggc
gctgctgaactgcatgcccgcgtgaaagtgcgtatcactgaaaccgttatcggtgacaat
ggtgagcgtactgaacaacgtcgtatcgtagataccacagtcggtcgtgctctgctgtca
ttgattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atttctaagctgttgaacacctgttaccgtcaattaggtctgaaagataccgttatcttc
gctgaccaactgatgtatacaggtttccgttacgccactatctctggtgcatctgtcggt
atcgacgacatggtgatcccagctgagaagtacaccttagttgctgacgctgaagccgaa
gtgctcgaaattcaagagcagttccaatcaggtctggttactgctggtgagcgttacaac
aaagttatcgacatctgggcaagtgcgaacgaaaaagtttctaaagcgatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgttgaagaaaaacaagcttcgttcaat
agcatttacatgatggccgactctggcgctcgtggtagtgctgcacagatccgtcagtta
gcgggtatgcgtggtctgatggcgaaaccagacggttcgatcattgaaacgccaattacc
gctaacttccgtgaaggtctaaacgtacttcagtactttatttctactcacggtgcgcgt
aaaggtcttgccgatactgcattgaagacagcgaactcgggttacctgactcgtcgtctg
gtagacgttgctcaagacttagtcgtcattgaagacgattgtggtactcacgaaggtcta
accatgaagccgctgattgaaggtggtgatgtggttgagccattacgtgaacgcgtactg
ggtcgtgtggttgctgttgatgtgttctatccaggcactgaagacgtactggcaccacgt
aacacgctgctcgatgaagcatggtgtgacaagttagaagagcattcaatcgatgaagtg
attgttcgttcagtcattacctgtgataccgattttggtgtgtgtgctgcctgttacggc
cgtgatttggctcgtggccatatcatcaaccacggtgaagcgatcggtgttgtggctgca
caatccatcggtgaacctggtacacagttaacgatgcgtacgttccacatcggtggtgct
gcgtcacgtgcctctgcagaaaacaacgttcaagtgaagaactcaggttcgttgaaactg
cacaacgctaagtacgtaacaaacacagacggcaagctggttatcgtttctcgttcttct
gaactggcaatcatcgacgaattaggtcgtgagaaagagcgttataaagtgccttacggt
actgtgctcgagaagttagaagaagcatcagtagaagcaggcgatatcatcgctaactgg
gacccacatactcacccaatcatcactgaagtggcgggtagtattaagttcgttgacatg
atcgacggcgtgaccatgactcgtcaaacagacgaactgacaggtctgtcttcaatcgtg
atcctcgacgtgggtcaacgtggttcagcgggtaaagaaatgcgcccaatgatccgtctg
gttggtgccgacggtagcgacctgatgatcccaggtactgaagtacctgcacaatacttc
ttaccaggcagtgcgatcgttaacctcgacgacaacgcgcaaatcgctgtgggtgacgcg
ttagcacgtattccacaagaatcgtctaaaacacgcgacatcacgggtggtctaccacgc
gttgctgacctgttcgaagctcgtaagccaaaagagccagcaattctggcggaaatctct
ggtaccatctcgtttggtaaagagactaaaggcaagcgtcgtctggtgattacaccagcg
gatggcggtgaacagtacgaagagatgatcccgaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgctgacggtccagaagcggcgcacgacatt
ctgcgtctacgtggcatccacaacgtagctaactacattgtgaacgaagtacaagacgta
tatcgtctacaaggcgtgaagatcaacgataagcatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgcgtaatcacctctgcaggtgatagtgagttcttagaaggcgaacaagta
gaagtgtctcgcgtgaagatcgctaaccgcgacctgatcgaacaaggcaaagtgcctgcg
accttcgaacgtgaactgctgggtattaccaaagcgtctctggcaacagaatcgtttatc
tctgcagcatcgttccaagaaacaactcgcgtactgacagaagctgccgtaggcggcaag
tctgataacttacgtggtctgaaagaaaacgtaatcgttggccgtctgatcccagccggt
actggttacgcttatcacaagacccgtaacgatgcccgtgctaagaaagacgagccagtt
gtagtgaataagatcactgcaagtgaagcagaacaaaaccttgcagacctcttaaacttg
gctggcagccaagattaa
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integrated database retrieval system
