Shewanella sp. FDAARGOS_354: CEQ32_19495
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Entry
CEQ32_19495 CDS
T04944
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ32_19495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shf03019
]
CEQ32_19495
03009 Ribosome biogenesis [BR:
shf03009
]
CEQ32_19495
Enzymes [BR:
shf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEQ32_19495
Messenger RNA biogenesis [BR:
shf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ32_19495
Ribosome biogenesis [BR:
shf03009
]
Prokaryotic type
rRNA helicases
CEQ32_19495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
HD_4
Cas3-like_C_2
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ASF16968
LinkDB
All DBs
Position
complement(4329741..4331612)
Genome browser
AA seq
623 aa
AA seq
DB search
MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFIKNFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSER
QLALFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRNGMAILFVTSREMRMLRTIE
RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMNNDLEFMREAVAQLCQQLEVDTDLLA
AALLHQVQQERPLQLPAIQERVRDERSERSERGSDRGADRGERRSRESRPMPASLGSAEA
LKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDSVTTVDLPDGM
PKDVLQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRSDRPAGDRKPRAASGDKP
FADRKPRSDKPAGERRPRKPREE
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgtgaactcggcctatccgagaatttgttgcgtgct
cttgacgagctaggttatgaaaaaccaacgccaatccaatcagccagtattgatccactt
atggctggcaaagatattttaggtcaagcgcaaacaggtacaggtaaaactggcgccttc
gcgctgccgctgctgaataaagtcaccagccaaaccacaccacaaattttagtattagca
ccaacgcgtgaacttgctgttcaagttgctgaagcgttcagtagctatgccaaatttatt
aagaatttccatgtactgccgatctacggtggtcaaagcatgcaacaacagttgaatgcc
ctcaaacgtggtccacaagttatcgtgggtacgcctggtcgtgtaatggaccatatgcgt
cgtggcacgttaaaactcgattcattaaaagcactcgtgctcgatgaagccgacgaaatg
ctaaaaatgggcttcatcgatgatatcgaatggatccttgagcacacgccaagcgagcgc
caattagcactattctcggccacaatgccagaacaaattaaacgtgttgctaaccagcat
ttacgtagccctgtacatgtgcgtatcgagtctagccaaacgacagtagagtcaatcgaa
caacgtttcgtacaggtatcacagcacaataaattagaagcgttagtacgcgtgttagaa
gttgaaaatactgaaggtatcatcatcttcgttcgtactcgtaactcatgtgttgaatta
gctgaaaaacttgaagcccgtggctatgcatcatcacctttacatggtgatatgaaccaa
caagcccgtgagcgtgcagttgaacaactcaaaaacggcaagctagacattctgatcgcg
actgacgttgcggcccgtggtctagacgttgagcgtattggccacgtagtaaactacgat
attccatacgatacagaagcttacgtccaccgtatcggtcgtactggccgtgctggtcgt
aatggtatggcaattctgttcgtcactagccgtgaaatgcgtatgttgcgcactatcgag
cgtgcgactaacagccgtatttcgccaatgaaagtaccaagcccagaaaccgttgcagaa
cgtcgcctgtcacgcttgggtgagcagctcgctcaaaccatgaacaacgatctcgaattt
atgcgtgaagctgttgctcagttatgccagcaacttgaagtagataccgatctgctcgca
gcggccctactgcaccaagttcagcaagaacgtccactgcaattacctgcgattcaagag
cgtgttcgtgatgaacgcagtgagcgcagcgaacgtggttcagaccgcggtgctgaccgt
ggcgaacgccgtagccgtgaatctcgtccaatgccagcaagcttaggtagcgctgaagcg
ttaaaagacaatccagacctgaaaatgtgccgttatgtgatcgacgtaggtcgtgaaaat
ggcgtaggtgtaggcaatatcgttggcgctatcgcaaacgaagccaatattgacagccgt
tatatcggtgcaatccaactttatgattcagtgacaactgttgacctgccagatggcatg
ccaaaagatgtactacaacacctgaagaaagtgcgtgtgtgtggtaagccattgaatatc
cgtgaagctggcgaccaagtctttgttgactctggccgtggtgcccgtagcgaccgtcgt
ccacgtagcgaccgcccagccggtgatcgtaagccacgtgcagcgtcgggtgacaagccg
tttgctgaccgcaaaccacgttcagacaagccagcaggcgaacgtagaccacgtaaacca
cgcgaagagtaa
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