Shewanella sp. FDAARGOS_354: CEQ32_20515
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Entry
CEQ32_20515 CDS
T04944
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ32_20515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shf03019
]
CEQ32_20515
Enzymes [BR:
shf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEQ32_20515
Messenger RNA biogenesis [BR:
shf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ32_20515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ASF17158
LinkDB
All DBs
Position
complement(4558634..4560250)
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AA seq
538 aa
AA seq
DB search
MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL
ELLAKGQKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL
RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ
NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQ
ENWQQVLVFSRTKHGANRLAKSLIQADISAAAIHGNKSQGARTKALADFKSGEVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIER
LINRVLERQEVAGFGPVHALPETTLTPQGKNHKVKAVASQRKHRSAGKPAPRSGSGRDAS
QTSSVRDGNHDKHSTPSRNSNEHHKTEAAVTRSPKPKSKHPLRDGGTTNSATAGNNAKAK
PHSGAQQRSHAERSDKSNNDGRRQEQPKGRNPHSTKPASNEPKQHSHRADNRPNRVKP
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttccgccttaggtttatccgcaccactccaaaaagccgtatccgaacagggc
tatgacacgccatctcccatccaagcgcaggcaattccagctgtactaacgggcaaagac
gtcatggctgcggcccaaacgggaacaggaaaaaccgcaggttttacgctgccattactg
gaattactcgctaaaggccaaaaagccaagtcaggacaaactcgcgccttagtcttaact
cctacgagggaactggcggcacaagttggcgaaagtgttgaaacctatggtaaatatcta
ccactgcgttcagctgtggtctttggtggcgtgcctatcaacccgcaaatcaataaatta
cgtcatggtgttgatgtgttagttgccacaccagggcgactattagatcttgtgcaacaa
aatgcggtgaagtttaatcaacttgagatcttagtgctcgacgaagcggatcgtatgttg
gatatgggctttatccgtgatatcaaaaaaatccttgcactcttacccgctaagcgacaa
aacctgatgttttcagccaccttctccgatgagatccgtgagcttgcaaaagggttagtc
aatcatccggttgagatttctgtcacgccgcgcaatgccgcagcaacgacggttaaacaa
tggatttgccccgttgataaaacgcaaaaatcagccctgctgatccaactcatcaaacag
gaaaactggcagcaagtgttagtgttttcgcgtactaaacatggcgcaaaccgactcgcg
aagagccttatccaagccgacattagcgctgccgcgatccacggtaataaaagccaaggt
gcgcgcactaaagccctcgccgactttaagagcggtgaagttcgcgtattggttgcgacc
gatattgccgcccgcggtttagatatcgatcagttaccgcaagttgttaactttgattta
cctaacgtgcctgaagattatgtgcatcgcattggccgtaccggccgtgctggcgccaca
ggccaagccgtttcattagtcagcagcgaagaaattaaactgcttaaagatattgagcga
ttaattaaccgcgtgctcgagcgccaagaagttgcaggttttggcccagtgcatgcgctg
cccgaaacaacgctcactccccaaggcaaaaatcataaagtaaaagccgtggcaagccag
cgtaaacaccgcagtgcaggaaaacctgccccacgatctggttctggccgagatgcgtct
caaacatcaagcgttcgagatggcaaccacgataagcacagcacgccatcacgcaacagc
aatgaacatcataagaccgaggcagcagttacacgctcgccaaaaccaaagagtaagcat
cctctgcgcgatggcggcacaactaacagtgcaacggcagggaacaatgcaaaagcgaaa
ccgcattcaggtgcacagcaacgtagccatgcagaacgaagcgacaaatcaaacaatgat
ggacgccgccaagagcagcccaaaggccgcaatccacacagtacaaaaccggcttcgaat
gagccgaaacagcactcacatcgcgcagataaccgcccgaatcgtgttaagccttaa
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