Sphingobacterium sp. 21: Sph21_0774
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Entry
Sph21_0774 CDS
T01450
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shg
Sphingobacterium sp. 21
Pathway
shg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sph21_0774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shg03019
]
Sph21_0774
Enzymes [BR:
shg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sph21_0774
Messenger RNA biogenesis [BR:
shg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sph21_0774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ChuX_HutX
P-loop_SecA
HEM4
ERCC3_RAD25_C
DEDD_Tnp_IS110
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADZ77351
UniProt:
F4CAS5
LinkDB
All DBs
Position
complement(958077..959336)
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AA seq
419 aa
AA seq
DB search
MSFKELKLIDPLLKAIHKEGYETPTPIQSQAIPVVLSGRDLLGCAQTGTGKSAAFILPIL
QQLNSLPNKEKAVKALVLAPTRELAIQINESIATYGQLLPLKHQVVYGGVNINTQISGLK
KGIDILVATPGRLLDLVGQRVLTLRAVSHFVLDEADRMLDMGFIHDIKKVVALLPIKRQT
LFFSATMPPEITKLANTLLKNPVRVEVTPVSSTAEKVTQVVYAVDKANKPKLLLHLLKSE
VRDHVLVFTRTKHGADRLVKFLAKQGVQAAAIHGNKSQNARQNALQAFKSGQLKVLIATD
IAARGIDVEELKFVINFDLPNEPETYVHRIGRTGRAGASGKALSFCDLEERPYLQSINNL
TNQAIPVINEHPFPATDKFVAVPLPKRPLQNKSEKASTNKNRKKRRFRPANAQKGNRIG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatttaaagaactgaagcttattgatcctttattgaaggcaatccataaggagggg
tacgaaacccccacacccatacagtcccaagcgattcccgttgtactttcaggaagagat
ttactcggttgcgcccaaacaggtacgggcaaatctgcggcttttattctgcctattttg
cagcaactgaacagcctgcctaataaagagaaagcagtgaaagctttggtgttggccccc
acgcgggaattggctatccaaattaacgagagtatcgctacgtatggccaactgctaccc
ttaaaacatcaagtcgtttatggaggggttaatattaatacgcagatttcaggattaaaa
aaaggaatcgatatattggtagcgactcccggacgtcttttggatttggttggacagcgg
gtgcttacccttcgggctgtttctcacttcgtgctggacgaggcggatcgaatgttggat
atgggattcattcatgatattaaaaaagttgttgctcttttgccaataaagcgacagacg
cttttcttttcagcaaccatgccgcccgaaattacgaaactcgcgaatacgcttttaaag
aacccggtacgtgtagaggtaacaccggtttcttcaacagccgaaaaagtgactcaagta
gtatacgctgttgataaggcaaataagccgaagttgcttttacaccttttaaagagtgaa
gtgcgtgatcatgtgctggtgtttacgcggacgaagcatggtgcagaccgtttggtaaag
ttcttggcgaaacaaggtgttcaagcagcagctattcatggaaataaatcgcagaatgcc
cgacaaaatgcacttcaagcttttaagagcggccagctaaaagtacttattgcgacggat
atcgcagctcgtggaatcgatgttgaagaacttaaatttgtgatcaactttgatctccca
aacgagcctgaaacttacgtgcatcgtattggccgtaccggtagggcgggtgcgagcggt
aaagctctttcattttgcgatctggaggaacggccctatttgcaaagtataaacaattta
acaaatcaggccattcccgtgatcaatgagcatccttttcctgcgactgataagtttgtg
gctgtacctctcccgaaacgaccgttacagaacaaatcagaaaaagcgtcaacaaataaa
aatcggaaaaaacgccgattcaggcctgccaacgcacaaaaagggaatagaataggctaa
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