Sphingobacterium sp. 21: Sph21_3055
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Entry
Sph21_3055 CDS
T01450
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
shg
Sphingobacterium sp. 21
Pathway
shg03030
DNA replication
shg03430
Mismatch repair
shg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sph21_3055
03430 Mismatch repair
Sph21_3055
03440 Homologous recombination
Sph21_3055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shg03032
]
Sph21_3055
03400 DNA repair and recombination proteins [BR:
shg03400
]
Sph21_3055
Enzymes [BR:
shg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sph21_3055
DNA replication proteins [BR:
shg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sph21_3055
DNA repair and recombination proteins [BR:
shg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sph21_3055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
ExoX-like_C
RNase_H_2
Rv2179c-like
DNA_pol_B_exo2
T4_Spackle
Motif
Other DBs
NCBI-ProteinID:
ADZ79600
UniProt:
F4C5E3
LinkDB
All DBs
Position
3794576..3795568
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AA seq
330 aa
AA seq
DB search
MILNLKRPLAFFDLETTGVNVASDRIVEISILKAMPDGSEQVKTMRINPEMPIPLSSSLL
HGVYDEDIKDAPTFKQVAQEIADFLEDTDLAGYNSNKFDIPVLMEEFLRAGINFDIENRK
FVDVQNIFHQMEQRTLKAAYKFYCDRTLENAHSAEADVRATYEVLLAQVQRYDGVEWEDK
SGNKSIPVKNDVDALHRFTNLNRPVDFAGRIIYDENGVEVFSFGKHKGKSVVEVFKIEPS
YYSWMMQGDFPLYTKRCIEKIWTDFRNIQHNRGANVKPSNASDVAIQPKTKPYGGNKPYS
GNQHLDKAKEKKSGPITEDMLKSLQDKFRK
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgatcttaaacctaaaacgcccattggcattttttgatttagaaacaacaggcgtaaac
gttgcttcggatagaattgtagaaatttcaatccttaaagcgatgccagacggaagtgaa
caggtaaaaaccatgcgtataaatccggagatgcccattccattaagctcttcactttta
cacggagtatacgacgaggacatcaaagacgctccaaccttcaagcaagttgcacaagaa
attgctgatttcttggaggatacggatttggccggttataactccaataagtttgatatc
cctgttttgatggaagagtttctaagagcgggaattaattttgacattgaaaacagaaaa
ttcgtcgatgttcagaatatctttcatcaaatggagcagcgtacattgaaagcagcttat
aagttttattgtgatagaactttggaaaatgcccatagtgctgaagctgatgttcgtgct
acctatgaagtgttgttagcccaagtgcagcgttatgacggcgttgaatgggaagacaaa
agcggcaataaatcgatacctgtaaagaacgatgtagacgcgcttcaccgatttaccaat
ttaaatagaccggttgattttgcgggccgtatcatttacgatgagaatggcgttgaggtt
ttcagttttggtaagcataaaggcaaaagcgtagtggaagtgttcaagatagagccaagc
tattattcctggatgatgcaaggtgactttccgttatataccaagcgctgtatagaaaaa
atatggaccgatttccgcaatatacaacataatagaggcgctaacgttaaaccttcgaat
gcctcagatgtagcgatacagccgaaaacaaagccctatgggggaaataaaccctatagc
ggtaatcaacatttagataaggctaaagaaaagaaaagcggccctatcacagaagatatg
ctgaagagcttacaagataagtttaggaaatag
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