Sphingobacterium sp. 21: Sph21_3088
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Entry
Sph21_3088 CDS
T01450
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shg
Sphingobacterium sp. 21
Pathway
shg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sph21_3088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shg03019
]
Sph21_3088
03016 Transfer RNA biogenesis [BR:
shg03016
]
Sph21_3088
Enzymes [BR:
shg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Sph21_3088
Messenger RNA biogenesis [BR:
shg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Sph21_3088
Transfer RNA biogenesis [BR:
shg03016
]
Prokaryotic type
tRNA degradation factors
Sph21_3088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ADZ79631
UniProt:
F4C5H4
LinkDB
All DBs
Position
3829843..3832041
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AA seq
732 aa
AA seq
DB search
MDAFFKTTNASLNENMSYNAIKKTFDIGDGRQIEIETGKLAKQADGSVVVKMGNTMLLAT
VVSAQEAKPGTDFLPLSVDYQEKYAATGRIPGGFLRREARLSDYEILISRLVDRALRPLF
PDDYHADTQVMITLISADKDIMPDALAGLAASAALAVSDIPFNGPISEVRVAKIDGKFVI
NPLLSDLERATLEFIVAGSANDIVMVEGEAKEISEEEMVEAIAFAHEAIKVQVQAQLELA
EMVGKLEKRVYNHEPSNPELKERVYAATYDSVYAVAKSGLSKKERSAKFADIAEAFALTL
GEDVDEETVFLAKKYFHDVQYDAVRNLILNEGIRLDGRDVRTVRPIWSEVDYLPAAHGSA
IFTRGETQSLTSVTLGAKEDEQMIDGAFINGYSRFILHYNFPGFSTGEVRPNRGPGRREV
GHGNLAMRSLKQVLPSQEENPYTIRVVSDILESNGSSSMATVCAGTLALMDAGVKITAPV
SGIAMGLITDEKTGKYAVLSDILGDEDHLGDMDFKVTGTSKGIVACQMDLKINGLKWEVL
KEALYQAKESRLHILNEMLKTIEAPREDFKPHAPRIVSLTIDKEFIGAIIGPGGKIIQEM
QRETGTTISIEEIEGKGIVQVFADNKTSIDDAVRRIKAIAAKPEVGDVYEGKVKSIMPFG
AFVEILPGKDGLLHISEIDWKRYETMEGIFQVGEIVKVKLLDIDKQGKLKLSRKALLPRP
EKKQEPENKQEQ
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgttttttaagacgaccaacgcatcactgaacgaaaacatgagttataacgca
attaaaaaaacattcgatattggcgatggccgtcagatcgaaattgaaaccggtaaatta
gcgaaacaggctgacggttccgttgtggttaagatggggaacaccatgcttttagccacc
gtggtatccgctcaagaagcaaaaccaggaactgattttctacctctatctgttgattat
caagaaaaatatgcggcaaccggtcgcattcccggcggatttttgcgaagagaagcacgc
ttatccgactatgaaattttaatttcacgcttggttgaccgagcgctacgccctttattc
cctgatgattatcatgcagatacacaggttatgataacactgatatcagctgataaagat
attatgccggatgcattagcgggattagcggcatccgcagctttagctgtttccgatatt
ccttttaacggacccatttcggaagtccgcgtagcaaaaattgacggtaaattcgtaatt
aatccattattaagtgacttggagagagctacgcttgagtttattgttgcaggttcggcc
aacgatattgtgatggtagaaggcgaggctaaggagatttccgaagaagaaatggtggaa
gccattgcttttgcccatgaggctattaaagtgcaggtacaagcacaactcgaattggca
gaaatggttggtaaacttgagaaaagggtttacaaccacgaacctagtaacccggaatta
aaagaacgtgtttacgcagctacttacgacagtgtgtatgccgttgctaaatccggtttg
tctaaaaaagagcgatcagccaaatttgctgacattgcagaggcttttgcccttacattg
ggcgaagatgtggatgaagaaaccgtattcttagcaaagaaatatttccatgacgtacaa
tatgatgctgtgcgaaacctcattcttaatgaaggtatacggctcgacggacgtgatgtg
cgtaccgtgagacctatttggagtgaagtcgattatttacctgccgcacacggatcggca
attttcacccggggtgaaacgcagtcgcttacttcagtcacactaggagcgaaggaagat
gagcaaatgatcgatggtgcatttattaatggctatagccgatttattttacactataat
tttcctggtttttccaccggtgaagtgagaccaaatcgtggcccgggtcgtagagaggtt
ggacatggtaacttggcgatgcgttcattaaaacaagtgctgcccagtcaagaggaaaat
ccttatacgatacgagttgtttctgatattttggaatccaatggttcgtcctctatggct
accgtttgcgccggaacattggcacttatggatgcaggtgtaaaaatcacagcgcctgta
tcaggaatcgcgatgggacttattacggatgaaaaaacaggtaagtatgcggtattaagt
gatattcttggtgatgaggatcatttgggagatatggactttaaagtcactggaactagc
aaaggtatcgttgcttgtcaaatggacttgaaaatcaatgggctgaaatgggaggttcta
aaagaagcactatatcaagctaaggagtcacgtttacatatcttaaacgagatgctcaaa
acgatcgaagctcctcgtgaagattttaaaccacacgctccgcgcattgtgagcttaaca
attgataaagagtttattggtgctattatcggccccggaggcaaaatcatccaggaaatg
caaagggaaaccggtactaccatttcgatcgaggagattgaaggtaagggcatcgtacaa
gtctttgcagacaataaaacttctatcgatgacgctgttaggcgcattaaagcgattgca
gcaaaaccggaagtaggcgatgtttacgaaggcaaagtgaaatctattatgcctttcggt
gcctttgtcgaaatcttaccgggtaaagatggattgttgcacatttctgagatcgattgg
aaacgttatgaaaccatggaaggaatttttcaagtcggtgaaattgttaaggttaaactg
ttagatatcgataaacaaggtaaattgaagctttccagaaaagcacttttgcctcgtccc
gaaaaaaagcaggaaccggaaaataaacaagaacaatag
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