Sphingobacterium sp. 21: Sph21_3256
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Entry
Sph21_3256 CDS
T01450
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
shg
Sphingobacterium sp. 21
Pathway
shg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sph21_3256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shg03021
]
Sph21_3256
Transcription machinery [BR:
shg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sph21_3256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
UPF0122
PgaD
NPV_P10
Motif
Other DBs
NCBI-ProteinID:
ADZ79798
UniProt:
F4C437
LinkDB
All DBs
Position
complement(4029206..4030066)
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AA seq
286 aa
AA seq
DB search
MRQLKITQSITNRESQSLDKYLHEIGKVDLITAEEEVILAQKIREGDQAALERLTKTNLR
FVVSVAKQYQNQGLTLGDLINEGNLGLIKAAKRFDETKGFKFISYAVWWIRQSILQAIAE
QSRIVRLPLNQVGSLSKISKAFSRLEQEYEREPSPEELADILETTVDKISDTLSNSGRHV
SMDAPFVQGEENTLLDVLENHDPNTDSNLIDESLSEEIKRSLATLTEREREIIVLFFGLG
SNHPLSLEEIGETFNLTRERVRQIKDKALQRLRHTSRSKILKSYLG
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgagacagctcaaaataacccagtcgattactaaccgtgaatcgcaatcgttagataag
tatttgcatgaaattggtaaagttgacctaattacagcagaagaagaagtaatacttgcc
caaaaaatcagggagggcgatcaagctgctttagagcgtttaactaagaccaatttacgt
ttcgtggtttcggtagctaaacaataccaaaatcagggactaacacttggagatcttatc
aacgaaggaaacttaggattgattaaggcagctaaacgctttgatgaaaccaaaggtttt
aaatttatttcttacgctgtttggtggatccgtcagtctatcttacaagcaattgcagag
caatcacgtatcgttcgtttaccgttaaatcaggtaggttcattaagtaaaatcagcaag
gccttttcgcgcctcgaacaagaatatgaacgcgagccttcgcctgaagagttagcggat
attttagaaactacggtggacaaaatctctgataccttaagcaattccggtcgccatgtt
tccatggacgcaccttttgttcagggagaagaaaacactttattggatgtattggagaat
catgatccaaatacagacagcaatttgatagacgaatcactttctgaggaaatcaaacgc
tcattagcaaccttaacggaacgtgagcgcgaaatcatcgtgttattctttggcttagga
tccaatcatccactttctcttgaggaaattggtgagacctttaaccttacaagagaacgc
gtaagacaaatcaaagataaagccttacaacgtttacgccatacctcacggagtaaaata
ttgaagtcttatctaggataa
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