Sphingobacterium sp. 21: Sph21_3922
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Entry
Sph21_3922 CDS
T01450
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
shg
Sphingobacterium sp. 21
Pathway
shg03030
DNA replication
shg03430
Mismatch repair
shg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sph21_3922
03430 Mismatch repair
Sph21_3922
03440 Homologous recombination
Sph21_3922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shg03032
]
Sph21_3922
03400 DNA repair and recombination proteins [BR:
shg03400
]
Sph21_3922
Enzymes [BR:
shg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sph21_3922
DNA replication proteins [BR:
shg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sph21_3922
DNA repair and recombination proteins [BR:
shg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sph21_3922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
ADZ80456
UniProt:
F4C2J7
LinkDB
All DBs
Position
complement(4750714..4755195)
Genome browser
AA seq
1493 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDTDNWPRCVQIAWQLHDDMGRLIEHQDYLVKPDGFNIPY
DAERVHGISTELALEQGIDLVEVLEKFNIALDKAKFIVGQNIGFDINIMGCEFHRMGIAT
TMGEKAVLDTCTEVTANLLQLPGGRGGKFKLPNLTELHAYLFGVPFAEAHNATADVEATT
RCFLELIKKNIFTAAELQVQEDYFEVFRTNNPDPIAAVGLQHVNLKAASDAIRQRLKADQ
DSISQKDLDANREELKEVDYVHLHNHTQFSILQSTISVADLVKAAAKHRMPAVAITDHAN
MMGAFHFVSNVLNHNKAAEAKNKTAVENGEEPSEVIIKPIVGCEFFVCDNHADKTRKDNG
YQIVMLAKNKAGYHNLAKMSSLAYTDGFYYVPRIDRKIIEQYKENIIVLSGNLYGEIPNK
LLNMGENQAEEALIWWKETFGEDFYIELMRHGQEDENRINASLVELARKHGVKLIATNNT
YYINKEDAHSHDILLCVRDAEKLATPKGRGRGFRYGLPNEEYYFKSGEEMKKLFTDIPEA
IANIQEIVDKVEVYSLYRNVLLPKFDIPEEFQVTEDQLDGGKRGENKYLRHLTYVGAAKR
YSEITPEIRERLDFELQTIEKTGYPGYFLIVQDFIAAAREIGVSVGPGRGSAAGSAVAYC
LGITNIDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITY
GTMAAKSSIRDTARVLDLPLFEADKIAKLVPNLKLNKLFNMDAQALKSALRTEELESVRE
LINLANGNDLGAETIRQAKALEGSVRNTGIHACGVIITPDDITNFVPVSTAKDSELYVTQ
FDNSVVESAGLLKMDFLGLKTLTLIKDTVSLVKHTKGIELNPDFFPIDDVKTYELFQRGE
TVGIFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFIRRKNGEEPITYDLE
ACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQRDVLDKMKPKFVQQA
AEKGHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSNNM
NDIKQISFFMEECKRMGLTVLGPDVNESFYKFTVNDQGAIRFGIGAVKGVGAGAVDTIVS
NRDEGKYLSIADFARRSNPRTINKKVYESLVYSGAFDCFGINRAQFFHVPEGLSQNGIER
LIKYTNDYQYNKNNAAMSLFGGTSDADIPEPSLPPCPEWGLMEKLRYEKNVVSMYITGHP
MDDYRLELEYFCQHKVSQLHLIDKMKAGAGKDADNGQDAGLESPEEGVEDVKTEFAKIKN
KDLVVGGMVTAVYHGMTKTGKPYGRMTFEDYSDSYEMALFGEDYVKFKGFMNENYFLQIR
GTVSERFRQQDNWEFKITSIQLLSELRDKMAKSISIQVPLHELNNKFVDNLQQIIHKNQQ
EQEIRNCQLKFVLLDYEDKVSLEMPAKGMKVHLSNEFLQDLRALTGDRGYKLN
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgtacttaatttttgatactgaaacgacaggattaccgaaacgttgggatgcacccatt
accgatacagataattggccgcgctgtgtgcagatagcttggcaattacatgacgatatg
ggccgtttgattgagcatcaggactatctggttaagccggacggtttcaatattccttat
gatgctgaacgggtccatggtatctctaccgagctagctttagaacagggaattgatctg
gtcgaggtgttggaaaagttcaatattgctttggataaagccaagtttattgtcggacag
aatatcggttttgacatcaatattatgggttgtgagtttcatcggatgggaattgccaca
accatgggcgagaaggcggtattggatacctgtacagaggttacggcaaatttgttacag
ctaccgggaggtaggggtggtaaatttaaacttcccaatctgacagagctgcatgcgtat
ttatttggagtacccttcgctgaagcacataatgcaaccgccgatgttgaagctacgaca
cgttgttttctagagctgatcaagaagaatattttcactgcagctgagttacaagttcag
gaagattattttgaggtttttcgaacgaataatccagatcctatcgcggcagttggttta
cagcatgttaatctgaaggcggcctctgatgcaattaggcaacgtttaaaggctgatcaa
gatagcatttcacaaaaagatcttgacgccaacagagaagagcttaaagaagtcgattac
gtacaccttcataatcatacgcaattttccattttgcaatcgaccatttcagttgccgat
ctagtgaaagccgccgctaagcatagaatgcctgctgtagcaattactgatcatgcaaat
atgatgggcgcttttcactttgttagcaacgtgttgaatcataacaaggcggcagaagcc
aaaaataaaacagccgtggagaatggggaggagccgagcgaagtgatcattaagcctatc
gtgggctgcgaattttttgtttgtgataatcatgcggataaaacgagaaaggacaatggt
taccagattgtaatgttagcaaagaacaaggcaggctaccataacttggccaagatgtct
tcgttagcttatactgatggattttattatgtacctcgtatcgataggaagataattgag
caatataaagaaaacattatcgtcctttcaggaaacttatatggtgaaataccgaataag
ttactcaatatgggagaaaaccaggcggaggaagctttgatatggtggaaggagactttc
ggtgaggacttctatatcgaattgatgcgacatggccaggaagatgaaaatcgtatcaat
gccagtttagttgaactggcaaggaaacacggggtaaaacttattgcaactaacaatacg
tactatataaacaaggaagatgcgcattcacatgacattcttttatgtgttcgggatgcg
gagaaactagcgacacctaaagggcgcggtcgaggcttccgttacggactgcccaatgag
gagtactacttcaaatcgggcgaagagatgaagaaactctttaccgacatccctgaagcg
attgcaaacatccaggagattgtagacaaggtagaggtttactcactttatcgtaatgta
cttttgccaaagtttgatattcctgaagaatttcaggtaacagaagatcagctggacggc
ggtaaaagaggagagaataaataccttcgacatttaacttatgtaggtgccgctaagcgt
tatagcgagattacaccggagataagagagcggcttgattttgagttacaaacaatcgaa
aaaaccggttacccgggctacttcctgattgtacaagactttattgcggcggctagagaa
atcggcgtgtccgttgggccgggtcggggctcggctgccggctccgcggtcgcttattgc
ttgggaattacaaacatcgatccaattgcatatgatttactttttgagcgtttcctaaat
cccgatcgtgtttccatgccggatattgacattgattttgatgatgaaggccggggacgg
gtaatggactacgttataaataaatatggcgccaatcaggtagcacagattattacctat
ggtacaatggccgccaaatcttctattcgagatacggcaagagtgttggacttaccatta
tttgaagcggacaaaattgcgaaactcgtaccaaacttaaagctcaacaagctatttaat
atggatgcacaggccttgaagagcgctttaagaacagaagagcttgagagtgtccgcgaa
ttaatcaatttggcaaatggtaatgatctcggagctgaaacaatcaggcaggcgaaagca
ttagaagggtctgtgagaaatacaggaatacatgcctgtggcgtaatcattacaccggat
gatattactaatttcgttcctgtatccacggcgaaagattccgagctttacgtaacgcag
ttcgacaactcggtggttgaaagcgcaggtttattgaaaatggactttctgggtttgaaa
accttaaccttgattaaggacacggtcagcttggtgaaacatacgaaggggattgaacta
aatcctgacttttttccgattgacgatgtgaagacctacgagcttttccagcgcggtgaa
acggtaggtattttccaatacgagtcgcccggcatgcagaagtatatgaaggagctaaag
ccgaccgtttttggtgacctgattgctatgaacgctctttatagacccgggccattggaa
tatatccccagttttatccgacgaaaaaatggagaggaacccattacctacgacttggaa
gcttgtgaagagtacttaaaagagacctacggtatcaccgtttatcaagagcaggtgatg
cttctctcccagaagctagccggttttaccaaaggtgaagcggacgttttgcgtaaggct
atgggtaaaaagcagcgcgatgtactggataaaatgaaaccgaagtttgtgcaacaagca
gcggaaaaaggacatgatgaaaaggttttggagaagatatggaaagattgggaggccttt
gcaagttatgcctttaataaatcgcactccacttgttatgcgtgggtggcctaccaaaca
gcctacctgaaggctcattatcctgccgaatatatggccgctgtattatccaataatatg
aacgatatcaagcaaatatcgttctttatggaagagtgtaaacgaatgggattaacggtt
ttgggtccggatgtaaatgaatcattctacaagtttacggtgaacgaccagggagctata
cgctttggtatcggtgcagtaaaaggagttggagccggcgctgtagacaccattgtgagc
aatagggatgaaggcaagtatctatccattgccgattttgcccggcgcagtaatccacgt
acgatcaataagaaggtatacgaaagtttggtgtatagtggggcttttgactgttttggt
ataaacagggcgcaattcttccatgtgcctgaggggctaagccaaaatgggatagagcgt
ctaataaaatatacgaatgattaccagtacaacaaaaataatgcagctatgtcattgttc
ggaggaaccagtgatgcggatattcccgaaccatccttaccgccatgccctgaatgggga
ttgatggaaaagctgcgttacgaaaaaaacgttgttagtatgtatataaccgggcatcca
atggatgactatcgtttggaattggagtatttttgtcaacacaaggtgagtcaactccac
ttgattgacaaaatgaaagccggtgcagggaaagatgctgataacggacaggacgcagga
ctagaatctccggaggaaggagtagaagatgtcaaaacggaatttgctaagataaaaaat
aaggatttagtagtaggagggatggtcaccgcagtttaccatggcatgaccaaaacgggc
aaaccctatggacgtatgacctttgaggattacagcgattcgtatgaaatggcacttttt
ggtgaagattatgttaaatttaaagggtttatgaacgaaaactactttttgcagattagg
ggcacagttagtgaacgttttcgacaacaagataattgggagtttaaaatcacttcgatt
caactattgtctgaacttcgggataaaatggcgaaatcgatcagtattcaggtaccgctg
catgaactgaacaataagtttgtagataatctgcaacaaattattcataagaatcagcag
gaacaggaaattagaaattgtcaattgaagtttgtattgttagactatgaagataaggta
agcttagagatgcctgcaaagggcatgaaagtacacctaagtaatgagtttttacaagat
ttgcgagctttaacgggcgataggggctataagttaaattag
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integrated database retrieval system
