Sphingobacterium sp. 21: Sph21_4481
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Entry
Sph21_4481 CDS
T01450
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
shg
Sphingobacterium sp. 21
Pathway
shg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sph21_4481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shg03021
]
Sph21_4481
Transcription machinery [BR:
shg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sph21_4481
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
GerE
IF2_N
DUF4809
Motif
Other DBs
NCBI-ProteinID:
ADZ80998
UniProt:
F4C2T6
LinkDB
All DBs
Position
complement(5379010..5379867)
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AA seq
285 aa
AA seq
DB search
MRQLKISDSITNRNNRSLSLYLNEVSKFELISADEEVSLAEKIREGDQLALERLTKANLR
FVISVAKQYQHQGLVLEDLINEGNAGLVKAARRFDETKGFKFISYAVWWIRQSIMSAISI
QSRAVRLPGNQISNLIKLRRSQAEMEQRLEREPSVEELAVELGTTTDRIIASFTNAERQL
SIDAPSVFSEEERLLDSLASSDPATDQQLIQDSLFLRIDLVLKKLSSRERQILTMFYGLS
NSEPQTLDEIAYQLKLTPERIRQLKTKALLHIKNSSSGRDLLQHL
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgagacaattaaaaatatccgattcaattaccaaccgtaataaccgttccctcagtctg
tatttaaatgaggttagcaagtttgaattaatcagtgccgacgaagaagtgtctttagct
gaaaaaataagagagggagatcaacttgcgctcgaacgtttaaccaaggccaacttgcgc
tttgtgatttctgtagcaaagcagtatcaacatcagggattggtattggaagatctaatc
aatgaggggaatgccggcttagtaaaggctgctagacgctttgatgaaacgaagggtttt
aaatttatctcttatgcagtatggtggattcgacagagtatcatgtccgctatttccatt
cagtctagagcggtccgacttccgggaaatcagatcagcaacttgatcaaactgcggcgt
tcccaggctgagatggaacaacgcctagaacgcgagccgagcgtggaagaattagccgtc
gagctgggaactactaccgatcgtattattgcctcttttacaaatgctgaaaggcagctg
tcgatagatgctccatcagtattctcggaagaagagcgattgttggatagtttagctagt
tcagatcctgccactgatcagcaactgattcaagactcgctctttctgcggattgatttg
gtgctgaagaaactttcatcacgtgaacggcaaattcttaccatgttttatggattaagc
aatagtgagccgcaaacgctggacgaaatcgcctatcagttaaaacttacaccggagcgt
atccggcagttgaaaacaaaggcgcttctacatattaaaaattcgtcttcaggacgcgat
ttgttgcaacatctttag
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