Sphingobacterium sp. 21: Sph21_4678
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Entry
Sph21_4678 CDS
T01450
Name
(GenBank) Alanine racemase
KO
K01798
Alr-MurF fusion protein [EC:
5.1.1.1
6.3.2.10
]
Organism
shg
Sphingobacterium sp. 21
Pathway
shg00300
Lysine biosynthesis
shg00470
D-Amino acid metabolism
shg00550
Peptidoglycan biosynthesis
shg01100
Metabolic pathways
shg01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Sph21_4678
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Sph21_4678
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Sph21_4678
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Sph21_4678
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
shg01011
]
Sph21_4678
Enzymes [BR:
shg01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.1 alanine racemase
Sph21_4678
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
Sph21_4678
Peptidoglycan biosynthesis and degradation proteins [BR:
shg01011
]
Precursor biosynthesis
Amino acid ligase
Sph21_4678
Racemase
Sph21_4678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
Mur_ligase_M
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
ADZ81188
UniProt:
F4CB74
LinkDB
All DBs
Position
complement(5578399..5580861)
Genome browser
AA seq
820 aa
AA seq
DB search
MSNKIYTVQDIATIVAVASELIDPSAIVNTLAYDSRKITDAKHALFFALPGRRDGHQYVQ
EAYRAGVRNFVVRPEAVNITDYLNCNWLFVQDTLHALQQLATYHRKQFAYPVIAITGSNG
KTIVKEWLYQLLSPEYHIVRSPKSYNSQLGVPLSLWQMDGQHNLAIIEAGISKVGEMEAI
ERMVKPTIGILTNIGHAHDDGFASTKEKTIEKLKLFKDADKIVYNPTYVDSAIEVPGRHH
FTWRIGKGAQLEVTASLKENGSQYVLEATYLQQSYVLTVPFVDKASIENLVCCWALMLAI
GYEAMVIVDRVKRLLPVSMRLELKKGINNNSIIDDSYSNDLSSLLIALDFLKQQQQHSRK
MLILSDLPTVGQNQTALYTKVASMLEGKGLDRLIGVGKHLRQHAALFRMDTQFFDTTEQL
LTNIPKLEIRDSTILIKGSRVFGFENISKALTLQTHETTLEINLNALEHNLNVYKSLLQQ
GTKLMVMVKAFSYGSGSFEIANLLQFNKVDYLTVAYADEGIALRKSGITLPIVVMSPGED
TFEQMIEYRLEPEIYSFSELEAFISKLPSEKMEAYPVHIKVDTGMHRLGFEPDDVDRLLA
KLKRTDKIVVKSVFSHLAASGIREHDNFTSEQIRLFDVFTQDLARGLGYHFIRHIANTSA
ISRFPQAQFDMVRLGIGLYGVSADEYRSLPLQSVTRLRTGITQVKYIKAGDTVGYNRNGR
LSGDGTIATVKIGYADGYSRRFGNGVGKMLIKGRLVPTVGDICMDMCMLDVTGIDVKEGE
EVLVMGEELSPETLAKAIGTIPYEILTSISQRVRRVYYFE
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataagatttatactgtacaagatatagcaactattgttgcagtagcttccgaa
ttaattgatccttcagccattgttaatacgctagcctatgatagtcgcaaaataacggat
gcgaaacacgctcttttttttgcgctgcctggaaggagagacggacatcaatatgtgcaa
gaggcctaccgtgcaggtgtcaggaattttgttgtcagaccagaagctgttaacattacc
gattaccttaattgcaattggctttttgtacaggatacactgcatgcattacaacagttg
gctacctaccatcggaagcaatttgcatatcctgtgattgcgattacaggaagtaatggc
aaaactatcgtaaaggaatggctttatcaattactatctccggaataccacattgttcgg
agcccaaaaagttataactcacagcttggtgtacctttatcactctggcaaatggatgga
caacataatttagccattattgaagccggtattagtaaagtaggtgaaatggaagccatt
gaaagaatggtgaagccaacaattggtatattaacaaacatcggccatgctcatgatgat
ggttttgcttccactaaagaaaagaccattgaaaagttaaagctttttaaagatgctgat
aaaatcgtttataacccgacatacgtagattcagcaatagaggtacctggtcgacatcat
tttacatggagaatcggcaaaggcgctcagctggaggtaactgcttctctcaaggaaaac
ggatcgcaatacgtgttagaagcaacgtaccttcaacagtcttatgtgctaactgtgcca
ttcgtggataaggcttctatagaaaatctcgtttgttgctgggcccttatgttagcaata
ggttatgaagcgatggttatcgttgatcgtgtgaaacgtctccttcctgtaagtatgcgt
ttagaacttaaaaagggcattaataacaactcgattatcgatgattcgtatagcaacgat
ctgtcatctttactgatcgctttagactttctgaaacaacagcaacaacattcacgtaaa
atgctgatactttccgatttaccgacagtagggcaaaatcaaacggcactttatacaaaa
gtggcctccatgctcgaaggcaaaggacttgatcgattgattggcgtaggaaaacacctt
cgtcaacatgcagcattatttcgtatggatacccaattctttgatacaacggaacaattg
ctgacaaatatacctaagcttgagattcgagatagtacaatactcattaaaggcagtcgg
gttttcggctttgaaaacatcagtaaagcgcttacgctacaaacgcacgaaactacgttg
gaaatcaatctaaatgcgctggagcacaatttaaatgtttataaatcattgttgcagcaa
ggcacgaaattgatggtaatggtaaaagctttttcctatgggagtggaagttttgaaatt
gctaatttgttacaatttaataaagtggattacctaacggttgcttatgccgatgaaggg
attgctcttcgaaaaagtggtatcacgcttcctatcgtagtaatgagccccggagaggat
actttcgaacaaatgattgagtatcgtcttgaaccggagatatatagcttttctgaactc
gaagcttttatcagcaagttgccttcagaaaagatggaagcctatccggtacacattaag
gtggatacaggtatgcatcgattaggctttgaaccggacgatgtggatcgattattggcc
aaattgaaaagaaccgataaaatagtcgtaaaaagtgtattttcgcacttggcggcaagc
gggatccgggaacacgataactttacatcagaacagatacggctatttgatgtttttacg
caagatttagcgcgtggcttaggttatcattttattaggcatatagctaatacatctgct
atttcccgctttccgcaagcacaatttgatatggttcgtttgggcatcgggctatatggt
gtctcagcagatgaatatcgttctttgccattgcagtcggtaactcgcctccgtacgggg
attacccaagttaagtatataaaggcgggagatacagtgggttataataggaacgggcgt
ttaagcggcgacggcaccattgctacggtaaagatcggttatgccgatggatacagtcga
aggtttggcaatggcgttggaaagatgcttataaaaggaaggcttgtacccactgttgga
gatatttgtatggatatgtgtatgttggatgttacagggattgatgttaaggaaggagag
gaggttttggtaatgggagaggaactttctccagaaacattggcaaaagcgatcgggact
atcccatacgaaatcctaacaagtatttcacaacgcgtaagacgcgtttattactttgaa
taa
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