Sphingobacterium sp. 21: Sph21_4881
Help
Entry
Sph21_4881 CDS
T01450
Name
(GenBank) sigma54 specific transcriptional regulator, Fis family
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
shg
Sphingobacterium sp. 21
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shg03000
]
Sph21_4881
Transcription factors [BR:
shg03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sph21_4881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF_2
AAA_5
GAF
AAA
HTH_8
GAF_3
Mg_chelatase
AAA_16
AAA_2
MCM
AAA_7
AAA_3
IstB_IS21
nSTAND3
DUF815
AAA_19
Parvo_NS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADZ81388
UniProt:
F4C7Q5
LinkDB
All DBs
Position
complement(5797821..5800421)
Genome browser
AA seq
866 aa
AA seq
DB search
MEFGMDYYQRERQVILQLSEDITRIHKKADLMALLSLRIKSYFYYVHAIVTLIDETENVY
RPFILDPTSSPLRDHPEYPTLIKTGFDLDEPFIQQVLAADGPVSFLLEEVISHPKSPSFL
RVNYACGIKEILMTPLKSNGRTVAFLHVYADNKDSFTPAFRSLIKGIAPQISHAVSNVIR
NELIVQKEENNKILLDASYDLSGVRNREDLAMAVRQSLKRLKALKGYVICTINDDRLTTS
TYIYDNITMPENEDLSEMLDFQYLINDGLQDRVLASPIPIFINIDSEIDRGITANYICFW
KSMGFRKMIGVALRNGNTDLGILWIGIDDINLTLLKGICLQISIAMANIMANDALVKKQE
QQQLLLNFCDDIAGVRTKADLRVAIFNVFDKLLNTKLAMLNLLEDDGLTLRHYMWDESLF
HHVKDSFEERLNARLDIHENYTVRVLNSNDAIILNVEEELKRDPGNPYAQLWKEVGFKYT
YATALRVGNTDIGTLWVLSDAINREFIKGICSQISVACANIRANERILAYKRILETENEL
LKEQMKTIYNFEEIIGRGDAMQKVYGLMSMVAESNSTVLLTGETGTGKELIARAIHNASS
RKNKVMVKVNCAALPANLIESELFGHEKGAFTGALEKRIGKFEMANNGTLFLDEIGEMPL
DAQVKLLRVLQEKELERIGGTTTIKVNVRIIAATNRNLATEVAEGRFRSDLFYRLNVFPI
HLPPLRDRRSDIALLAQFFLDRYSKNTGKNVKVLSARVIKELNGYSWPGNVRELEHVIER
SVLMTTDSVIRDVYLPVKSDDAVNETNVSNRTLEQVERAHIIDTLKRCAGKLAGPGGAAE
YLDVPSTTLHSKLKKLGIKKSDYFAE
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggaattcggtatggattactatcaacgggaaaggcaagttattctgcaacttagcgaa
gacattacccggattcataaaaaagccgatttgatggcacttttatcattacgaataaaa
agctatttctattacgttcatgccatcgttacgcttattgatgaaacggaaaatgtatat
cgtccattcatattagatccaacttcatctcctttaagggaccatccggaatatcctacc
ttgatcaaaacaggtttcgatttagatgaacctttcatacagcaggttttagcggctgat
ggacctgtatcatttctacttgaagaggtgatttcgcaccctaaaagcccctcttttttg
cgcgtaaattacgcatgtggcatcaaagaaatattgatgacaccgctaaaaagcaatggc
agaaccgttgcttttctacatgtttatgctgacaataaagacagttttacaccagcgttt
aggagtcttattaaagggattgctccccagatttctcatgccgtctctaatgttatcaga
aacgaattgattgttcagaaagaggagaataataaaattttactggatgcaagttacgat
ttatcgggtgtacgaaatcgtgaagatttggccatggctgttcgtcaatcgctaaagaga
ttgaaggctttaaaagggtatgttatctgcactattaacgacgaccgcctaacgacgagc
acatatatttacgacaacatcactatgccggaaaatgaagacctatcggagatgttggac
ttccaatatcttattaatgatggtttgcaagatcgggtattggcaagtcccattccgatt
tttattaatattgattcggaaatcgaccgaggcattacggcaaactatatctgtttttgg
aaatcgatgggcttcagaaaaatgatcggtgttgcgcttcgtaatgggaatacagattta
ggtatcctgtggataggtattgatgatatcaacttaacgttgttgaaaggtatctgtttg
cagatttccatagcgatggccaatattatggcaaacgatgcattagttaaaaaacaggaa
caacagcaattactgcttaacttctgcgatgatatcgcaggcgtgcgtacaaaagccgac
ttacgggttgctatcttcaatgtgttcgacaagttattgaataccaagttggcgatgctc
aatctactcgaagatgacggccttacgcttcggcactatatgtgggacgaaagtctgttc
catcatgttaaagacagttttgaagaacggttgaacgcccggcttgacattcatgagaac
tataccgttcgggtgttgaatagcaatgacgctattatattgaatgtggaagaggaatta
aaaagggatccgggtaatccctacgcgcagttgtggaaagaagttgggttcaaatatact
tatgcaacagccttacgggtgggaaacaccgatattggcactttatgggtcttgagtgat
gctatcaatagggagtttattaagggcatttgttcccagatttccgttgcatgtgccaat
attcgagcgaatgaacgtatactggcttataagcgcattctggagactgaaaacgaattg
cttaaagagcaaatgaagaccatctataatttcgaggaaatcataggcagaggtgacgct
atgcaaaaggtgtatggactaatgagcatggttgccgaatcaaactcaaccgttctttta
acaggtgaaacggggacgggaaaggagttgatcgcccgtgctattcacaatgcatcctct
cgtaagaataaagtgatggtaaaagtgaattgtgccgcattgcctgcaaatctgatcgaa
agcgaattgttcggccatgagaaaggagcttttacaggcgccttagaaaagcgtattgga
aaattcgagatggcaaataacggcaccttgttccttgatgagattggcgagatgccattg
gatgcgcaggtaaaactactccgagttcttcaagagaaggagttggaaagaattggtggc
accactaccattaaagtaaatgtccgtattatagcggcaaccaaccgtaatttagcgaca
gaagtagcggaaggccgttttcggtctgaccttttctaccgacttaatgtttttcctatt
catttacctccacttcgcgatcggcgatcggatatcgccttgcttgcacagttttttctg
gatcggtatagcaaaaataccggaaagaacgtgaaagttctttcagcacgggttataaag
gaattgaacggctatagctggcctggaaatgtccgcgaattagagcatgtgatcgaacgc
agtgttttaatgacaaccgactctgtcattcgagatgtttatttgcctgtaaaaagtgat
gatgcagtaaacgaaaccaatgtatcgaatagaaccttggagcaggttgaaagagcccat
atcattgatacactcaaacgttgcgccggtaagcttgcagggcctgggggcgcggcggaa
tacctcgatgttccatctactaccctccattccaaactaaaaaagctaggtataaagaag
tcggattatttcgctgaatga
DBGET
integrated database retrieval system
