Sphingobacterium sp. 21: Sph21_4885
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Entry
Sph21_4885 CDS
T01450
Name
(GenBank) sigma54 specific transcriptional regulator, Fis family
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
shg
Sphingobacterium sp. 21
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shg03000
]
Sph21_4885
Transcription factors [BR:
shg03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sph21_4885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_5
Mg_chelatase
HTH_8
AAA
AAA_3
AAA_16
AAA_2
MCM
AAA_7
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
ADZ81392
UniProt:
F4C7Q9
LinkDB
All DBs
Position
complement(5802452..5804590)
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AA seq
712 aa
AA seq
DB search
MSKVEERVPEKHLDAASLLTRDSMIHLSQLLATIRTKEELQLFVRNQLFSLVSFKEGLVC
IFDKTTENYNPFFASHSFEQLSFDEQLWHATLARESKAINEAVDRSELQGNLFTFNMFEQ
LVVDGHFAEISMDHLVLVGCRLQMGDHLVGLLCLVLNKSQYHASYAEKMLAWISGHLTTV
LANILAAEQLQRREYEQRALLAISNDFAAIKNSGDFLDIVNLKLKKLFDFSHSVLSLITE
DGKYLYPYIFDPKNPNISHRLYEGAIKLKFSTNYHIFKEPLDTGDVLVYSVDELMKDKDA
PVFIKINHDNKMKEMAVLALGTEGSYTGFIQFWTRVEGTFSPSCLDIIRSVSQQLAIALS
NLLAKDKIAEQLAEIELYKRKLEEQNISLQEELSAQYRYSEIVGEGKAIKSVFNAIGQVA
SSDSTVLIAGETGTGKELIAKEIHNRSKRSAKLMVKINCAAIPLNLIESELFGHEKGSFT
GAGERKLGKFELANGGTLFLDEVGEMPMEVQSKLLRVLQEREIERVGANFPIPIDVRIIA
ATNRNLLHEVTAGNFRADLYYRLNVFPINVPPLRERKEDIPILVEHFLDKHAKKIGKKLV
GVSREVLRKFRDYDWPGNVRELEHVIERGILMASQALITEAYLPDRHLDKIVSQPSELSS
TLTHEMHQITQVLRSCGGKVSGPGGAAELLGIPPSTLFSKLKRLGIKRNYAL
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaggttgaagagcgagtacccgaaaaacatttagacgcagcatccttgctgaca
agagattctatgattcacctaagtcagttgcttgccacgattcgcacgaaagaagagttg
caactttttgtacgaaatcagttgttttcgttggtatccttcaaagaaggattggtttgc
atctttgataaaacaaccgaaaactataaccccttttttgccagccattcatttgaacaa
ttatctttcgatgagcagctatggcacgcgacactggcacgcgaatcaaaggctataaat
gaggcagtcgatcgctctgagttgcaaggtaacttgtttaccttcaatatgtttgagcag
cttgtggtggatggccatttcgctgagatttcaatggatcatctggtgttggtaggatgt
cgcttacaaatgggcgatcatctggttggtttactttgccttgttctaaataaatcacaa
tatcacgctagttatgcggagaaaatgttagcatggatttcaggccatttaacaacggtt
ttagcgaatatattagcggcagaacaattacagagaagagaatatgagcagcgcgcgtta
ctggcaatcagtaacgattttgcagcaataaaaaattccggggattttttggatatcgtc
aatcttaaactgaaaaagctttttgatttttcgcatagcgtgctgagcttgataacggag
gatggtaaatacctatacccttatatttttgatccaaaaaaccccaatataagccatcgc
ctttatgagggtgcgataaaacttaagttttcaaccaattatcatatttttaaagaacct
ttggataccggtgatgtcttggtttattcggtagatgagctgatgaaagacaaagatgcg
ccagtcttcataaaaataaatcatgacaacaagatgaaggagatggccgtgctggcctta
ggaacggagggatcttacaccggatttattcagttttggacccgcgtggagggtacattt
tctccttcatgtttagatattattcgtagcgtatcgcaacagttggcaatcgctttatcc
aatttattggcaaaggataaaattgccgagcagttagccgagatagagctttataaacgt
aaattggaggaacagaatatatcgcttcaagaagagttgagtgcacagtacaggtatagc
gaaatcgtaggggagggaaaggctatcaagtcggtatttaacgccattggacaggtagca
agctcggatagtactgttcttattgccggtgaaacgggtacaggtaaagagttgattgct
aaagaaattcacaaccgctctaaacggagtgctaaattaatggttaagatcaattgcgcg
gcgataccgctgaatttaatagaaagtgaattatttgggcatgaaaaaggtagttttaca
ggtgccggcgagcggaagttgggtaaatttgaactggcaaatggtgggacgctttttctt
gacgaggttggagagatgccgatggaagtacagtcaaaactattacgtgtactgcaagaa
cgagaaattgaacgcgtaggtgctaactttccgataccgattgatgtacggattattgct
gcaacaaatcgaaatctgttgcatgaagtaacggccggaaacttccgggcggatttatat
taccgcttaaatgtgtttccgataaatgtccccccgttgcgggaacgaaaggaggacata
cccatattagttgaacactttttggataaacacgcaaagaaaataggaaagaaactagtt
ggcgtgtcgagagaggtccttcggaagtttcgggattatgattggcccggaaacgtgcga
gaactggaacatgttatcgaacgcggcattctaatggcatcgcaagcgctcattaccgaa
gcttatttgccggatagacatcttgataaaattgtttcgcaacccagcgagctatcttct
acattaacacacgaaatgcatcaaattacgcaagtattgcgatcgtgtggtggtaaagta
tccggccccgggggagcagcggagctattgggaatcccaccttctactttattcagtaaa
ttaaagcgtttggggatcaaacgaaattacgccttgtaa
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