Sphingobacterium sp. 21: Sph21_4888
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Entry
Sph21_4888 CDS
T01450
Name
(GenBank) sigma54 specific transcriptional regulator, Fis family
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
shg
Sphingobacterium sp. 21
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shg03000
]
Sph21_4888
Transcription factors [BR:
shg03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sph21_4888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
GAF_2
HTH_8
Mg_chelatase
AAA_16
AAA_7
AAA_2
nSTAND3
AAA_3
MCM
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADZ81395
UniProt:
F4C7R2
LinkDB
All DBs
Position
5807688..5811374
Genome browser
AA seq
1228 aa
AA seq
DB search
MKNGFEMGYPTSVSFNREDILEKLSLSLSKAKSIEEMLSILRQRLKPIFGTTSILLCRLN
EDKITYSIDHLLSISDKQSEFFRVYQESPCDYFDNYFNKVVEAGVPLFLEIDSHGIGKGN
GIAAIFTMLRAEEVVAIPILELNHDFALFFDKSSGNGTDPENLFMLCKSIALYLRLAFSK
IQETKLLTRAIELHQQERRLHKILATCYTKKEVKNWLLRHFLPYIGAEHANISIISADYE
RYCMFLDTKKTTDDQTVSFAFRCSGLNLSGSVIDLVFTSRTLQKEIIIEENGAEINMYNI
PLIDGDHVIAVLSIYTHNDHDINLKAIEPFEASIVEKLLFLKGQEEQLRISNERAFIKEL
RLALSSVYTSEGFLPILSEHLRKIWEYNDIALLIPLKELTRDGSYLNHFEAKRRVHPYFK
EWLTNCLSSLTELQTCNEEYSVEVYDVKNLPVNKALKAEHLAFCKETGIKTALIITLQND
GKFIGSLMLFSEKTGFPELEPFFKFSLSFLLSLTTSSLISKDLLATKEKQRRSLIDLGKS
LASFQNSIDLFDFIFNGLTNVISFEKASIVLVKSVEKQFSLLTINTFQNHQSDNLILSDT
QWENIAGHQLLKLVVKKDATFMEAKDLPNELRPFLTPTSENSEPTTIGCFPIPIEHDISA
VLFTTFPTDTDLEQATERFNMLVPYLTIALKNAKSYESLKKREQEQAQLLELSNQFAAIK
SSEDFSHIVNEKLKKIFYFSHSVIGLIDEGGETTSPFILDPHSRNFNHPKFDEIVKNNRF
SMKCPLFQKPIISGQLELFKTEEARHDGSMPAFVEMNYESGIKEIGVLAIKVEGKYMGFL
LLFSDHDNSFPPEKLGIIRGISSQIAVAVSNLISSAKIAKQFQQIESYKRKLEEENLLLH
EEIKTHYEYSEIIGDSPLMQNVFHLIDQVSQSDSTVLISGETGTGKELLARAIHNHSARK
NKLMVKINCAAMPANLIESELFGHEKGSFTGAFERKIGKFELAHQGTLFLDEVGEMPLEL
QVKLLRVLQEREFERVGGSTAIKVNVRIIAATNRNLQQEVTAGTFRADLFYRLNVFPIMA
PALRDRKQDMTMLVQHFIQKYNRKIGKEISGLSQDVMQKLLHYNWPGNVRELEHYIERAM
LMTSGKIIKEIGLPENAPLAPANEHASTTVYNNGYSLKESEKQHLMSVLRQCNGKVAGPG
GAAKLLGLPATTVYSKIKRLGLSKTYKL
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatggtttcgaaatgggttatccaacaagcgtatcgttcaacagagaagacatt
cttgaaaaattatccttgtctttgagtaaggccaaatcgattgaggaaatgttgtcgatt
ttgagacaacgactgaagccgatttttggcacgacgagtatcctgctttgtcgcttaaat
gaagacaaaataacctactctatcgatcatttgctttctatttcagataagcaatcagaa
ttttttcgggtttatcaggaatcaccatgtgattattttgacaactacttcaataaggtt
gttgaagcaggcgtacccctttttctcgaaatcgacagccacggaatcggtaaaggaaat
ggtatcgccgctattttcactatgctccgcgcggaggaggtggtagcgatacccattctc
gaattgaatcatgacttcgcgttgtttttcgataaatcttccgggaacggaacagacccg
gaaaacctgttcatgttatgtaagtcaattgcgttatacctccgtttagctttctcaaaa
atacaggaaacgaaattgctaacacgtgctattgagctacatcagcaagaaaggcgattg
cacaagatactggctacctgttataccaagaaagaagtaaaaaattggctattaaggcat
tttcttccctatataggagcagaacatgccaacatttctataattagtgctgattacgaa
cgttattgcatgtttttggacaccaaaaaaacaacggatgaccaaaccgttagttttgcg
ttccgttgttcaggattaaacctgtccggatccgtcatcgatctggtatttaccagcaga
accttgcaaaaggagattattatagaagaaaacggcgcagaaatcaatatgtacaacata
ccgcttatcgatggtgatcatgtaattgctgtactttcaatctatacacataacgaccat
gatattaacttgaaagcaattgagcctttcgaagcatctattgtagagaagcttttgttc
ttgaaaggacaagaagagcagctccggattagtaatgaaagagcttttataaaagagtta
cgtttagcactatcatcagtttataccagcgagggctttttacctatattatcagagcat
ctgcggaagatatgggaatataatgacatagcgctattgattcctttaaaagagctcacc
cgtgatggctcttacctaaatcatttcgaggctaagcgaagagtccatccttattttaaa
gaatggttaactaattgcctttcttcgcttacagaattacaaacatgcaacgaagagtac
tcggtcgaggtttatgacgttaagaatcttcctgtcaacaaagcacttaaagcagaacat
cttgcgttctgtaaggaaaccggaatcaaaacagcgttaatcattaccctacaaaacgat
ggaaagtttattggaagtttgatgctattttcagaaaagacaggttttccggaactggaa
ccatttttcaaattttccctgagttttcttctgtcgttgactaccagttcgcttatttcg
aaagacctattggcaacaaaggaaaagcaacgtcggtcgcttattgatttaggaaaaagt
ttagcttcttttcaaaatagcatcgatttgttcgattttatctttaacggtttaacaaac
gtcatttcctttgaaaaagcctctatcgttctggttaaaagcgttgaaaaacagttttca
ttattaaccattaatacctttcaaaaccatcaatcagacaacctcatattgagtgatacg
cagtgggaaaatatagcggggcaccagttgttaaaacttgttgtcaaaaaggatgcgacg
tttatggaagccaaagatttacccaatgaactccgcccctttcttactcctacgtcggaa
aacagcgaaccaacgactatcggttgttttccaataccaattgaacacgatatcagtgca
gttttgtttacaacatttccaacagatacggatctggaacaagcaaccgaacggttcaac
atgcttgttccctatctcacgattgcattaaaaaatgcaaaatcttatgaatcacttaag
aaacgggaacaagaacaggcacaactgctagagctaagcaatcaatttgcagcgattaag
agtagcgaagatttttcacatattgtcaatgaaaaactgaagaaaatcttctacttttcc
cattcagtgatcggtttaatagacgaagggggcgaaaccaccagcccattcattttagat
ccacattctcgaaatttcaatcaccctaagtttgatgaaattgtcaaaaacaatcgtttt
tcgatgaaatgtccgctctttcaaaaaccgataatttcagggcagcttgaacttttcaaa
acagaagaagcacgacatgatgggtctatgcccgcatttgtagagatgaactatgagagc
ggtatcaaggaaataggtgtattggcaattaaagtagaaggaaaatacatgggcttccta
ttgctcttcagtgatcatgacaacagttttccacccgaaaagctcggcatcatacgaggc
atttcatctcagattgcggttgcggtttcaaatttaatatcgagtgcgaaaatagcgaag
caatttcaacaaattgaaagttataaaaggaaactggaggaagagaatttactgctgcac
gaagagattaagacacattatgagtatagtgagatcataggtgattcgcccttaatgcaa
aacgtttttcacctcatagatcaagtatcccaatcagacagcaccgtacttatatccggg
gaaaccggtacaggaaaggagttgcttgcaagagccatacataatcattccgctcgaaaa
aataaattaatggtaaaaatcaactgcgccgccatgccggcaaacttaattgaaagtgag
ctattcggccatgaaaagggcagtttcaccggcgcttttgaacgcaaaatcggaaagttc
gaactggctcaccaaggaacgctgtttcttgatgaggtaggcgaaatgcctttagagctt
caggttaaattattacgtgttttacaagaacgggaatttgaacgggttggtggcagtacg
gcaatcaaggtgaatgtgcgtatcatcgccgccaccaacagaaatctgcagcaagaagtt
acggcagggaccttccgggccgacttattttatcggctaaatgtctttccaataatggcc
ccggcacttcgagacaggaagcaagacatgaccatgcttgtacaacattttattcagaaa
tataaccgaaaaatcggcaaagaaataagcggtctgtcgcaggatgttatgcaaaagcta
ttacattataattggccgggaaacgtcagagagcttgaacactatatagagcgcgcgatg
ctcatgacaagcggaaaaatcatcaaagaaataggtttgcccgaaaacgctccattggca
cccgccaacgagcatgcttcaacaactgtttacaacaatggttattcactaaaagagagt
gaaaagcaacatttaatgagtgttttgaggcagtgcaatggcaaagtcgccgggccgggt
ggtgcagctaaattattgggattacccgctacaaccgtttatagcaaaataaaacgtctt
ggtttatccaaaacctataaattgtag
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