Sphingobacterium sp. 21: Sph21_5037
Help
Entry
Sph21_5037 CDS
T01450
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
shg
Sphingobacterium sp. 21
Brite
KEGG Orthology (KO) [BR:
shg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shg03016
]
Sph21_5037
Enzymes [BR:
shg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Sph21_5037
Transfer RNA biogenesis [BR:
shg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Sph21_5037
Prokaryotic type
tRNA splicing ligases
Sph21_5037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADZ81529
UniProt:
F4CBB8
LinkDB
All DBs
Position
complement(5960282..5961736)
Genome browser
AA seq
484 aa
AA seq
DB search
MEKEKISNNELKALGINAVEVLVNFSRVANGLLKHNVMNKPEILANLEALIDDPMPYTLK
KGGKFKNLAEDVIALRKEGKFVKQERTNFKLKEEIVDFPVWGLEQIEVGALSQMRTAVQL
PIAVAGALMPDAHQGYGLPIGGVLATTANTIIPFAVGVDIACRMCLSIFDLPAETLDTET
DKLKNLLVDHTYFGMGCTTKSYFDSSLFDSKTWGETKIIRSLKDKAYAQLGTSGTGNHFV
EWGELTLGEGALNDIPAGKYLALLSHSGSRGFGGAIANHYSRIAMTKTKLPGEAKHLAWL
DLDKDEGQEYWIAMNLAGEYASANHHEIHNKIARALGLRPIMMIENHHNFAWKEQLADGT
KVMVHRKGATPAGEGVLGIIPGSMSTPGFLVRGKGHTSSINSASHGAGRAMSRSAALKTL
DRAVVAADLVDKRITLLGSDLDEAPMAYKNIHAVMAAQHDLVDVLAKFEPRIVRMADARE
KPED
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaggaaaagataagcaacaacgagttaaaggcattagggatcaatgctgtggaa
gtactagtcaattttagccgcgtagccaatggtttgttaaagcataacgtaatgaataaa
cccgaaatattggctaatctagaagctttaattgatgatcctatgccatatacattaaag
aaaggtggtaaattcaaaaacctggcagaagatgtgattgctttgcgaaaagagggtaag
tttgttaaacaagaacgtaccaactttaaactgaaagaagaaatagttgacttcccggta
tggggcttggaacagattgaagtaggagccttatcacaaatgcggacagcggtacaatta
ccgattgcggtcgccggtgccttaatgccggatgctcatcaaggttacgggcttcccatt
ggcggagtgttggccactacggccaacacgattattccatttgctgtgggtgtcgatatt
gcatgccgtatgtgtttaagtatatttgatctacctgctgagacactcgataccgaaacc
gataaattaaagaatctgttagttgatcacacctattttggtatgggctgtactaccaaa
tcatattttgatagctccttattcgatagtaaaacctggggagagaccaagataatccgc
agtttaaaggataaggcgtacgctcaattaggaaccagtggaaccggtaaccattttgta
gaatggggtgaactgaccttaggcgaaggtgccttgaatgatataccggcgggtaagtat
ttagcgctgctttcgcactccggctctcggggctttggaggtgcaattgcaaatcattac
agtaggatagcgatgactaaaaccaaacttccaggcgaggctaaacatttagcatggctt
gatctggataaagacgaaggacaggaatactggatagccatgaacttggcaggggaatat
gccagtgccaaccatcatgaaatccataacaaaatagcacgggccttaggacttagaccc
atcatgatgatcgagaaccatcacaactttgcatggaaagagcagctggctgatggtacc
aaagtaatggtacaccgtaaaggtgccacgccggcaggtgagggtgtgttgggaattatt
ccaggtagtatgagtacgcccggctttttagtacgcggtaaaggtcatacgtcaagcatc
aactcggccagtcatggcgcgggcagggccatgagtcgtagcgcagctttaaaaacgttg
gatagagctgtcgttgccgctgacttagttgacaaacgcatcaccttgctcggaagcgat
ctcgacgaagcacctatggcatataagaatatccatgcagtaatggccgctcaacatgat
ctggttgacgtgttggctaaatttgagccaagaatagtcagaatggcagatgcacgcgag
aaaccggaggattaa
DBGET
integrated database retrieval system
