Slackia heliotrinireducens: Shel_10960
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Entry
Shel_10960 CDS
T00981
Name
(GenBank) polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shi
Slackia heliotrinireducens
Pathway
shi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shel_10960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shi03019
]
Shel_10960
03016 Transfer RNA biogenesis [BR:
shi03016
]
Shel_10960
Enzymes [BR:
shi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Shel_10960
Messenger RNA biogenesis [BR:
shi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Shel_10960
Transfer RNA biogenesis [BR:
shi03016
]
Prokaryotic type
tRNA degradation factors
Shel_10960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH_2
KH_PNO1_2nd
KH-I_KHDC4-BBP
PCB_OB
FlgM
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ACV22131
UniProt:
C7N5E6
LinkDB
All DBs
Position
1250986..1253217
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AA seq
743 aa
AA seq
DB search
MEKVSLAFELYGKEYAFETGELAKQATGAVLVKQGETTVLVTAVISAQEKDYDFFPLTVD
FMEKMYAVGRIPGGYLKREGKASDKGTLTARMIDRPIRPGFADGFKQEVHVVATTFAIDG
QNPPDCICVGGASAALMIGSAPFDGPAACVRIARNAETKEFIVNPTYEEQETSDLELTIA
GTRDYISMVEAGANEVTEEDMLAAMNFGQEAIAAFCEKQAEFLAMVAPEPREWPIHVPDA
SIAERVDAHFDEMSAALKDADKQSRIAKVEELKAAIKANDFSEEEQAAWGSDIAAALKSL
EKHAMRRMVIETGERADGRAADEIRPLYIRPGYLPRVHGSGLFQRGQTQALSVCTLGLLN
EAQRLDTIDPATGKRYMHQYNFPPYCTGEVGRMGAPKRREVGHGALAERAILPVLPSEDE
FPYAIRVVSEILESNGSSSMASTCGSCLALMDAGVPIKAPVSGIAMGLIKEEDGVVILSD
IQGLEDFLGDMDFKVTGTANGITALQMDNKARGLSTEILGRALQQAKEGRAHILNAMLAE
IPGPREELRDTAPRIETIHIPVDKIREVIGKGGETIRGIQDSTGASIEIQEDGTVHIASV
DQEAGRAAKAAVEAIVKEPEVGEVYEGTVVGIQTFGAFVKLTPSKDGLLHISRMANGRVS
KVEDVLNMGDTVKVQVIEIDPKSGKVSLDRLEKPDAPEGSEPAHNGREERGNGRDRRPGR
GNRNNGNEDRGGDNRKPRRRHQQ
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagtttctttggccttcgaactgtacggcaaggagtacgccttcgaaacgggc
gagctggccaagcaggccacaggtgccgtcctggtcaagcagggcgaaaccaccgttctg
gtcaccgctgtcatctcggcccaggaaaaggactacgacttcttcccgctgacggtcgac
ttcatggagaaaatgtacgccgtgggccgcatccccggcggctacctgaagcgcgaaggc
aaagcatctgacaagggcacgctgacggctcgcatgatcgaccgcccgatccgccccggc
ttcgccgacggcttcaaacaggaagtccacgtcgtggccaccaccttcgccatcgacggc
cagaacccgcccgactgcatctgcgtcggcggcgccagcgcagccctcatgatcggctcc
gctcccttcgacggcccggctgcttgcgtgcgcatcgcccgcaacgccgaaaccaaggag
ttcatcgtcaacccgacgtacgaagagcaggagacctccgacctcgagctgaccatcgca
ggcacccgtgattacatctccatggtggaggccggcgccaacgaggtcaccgaagaggac
atgctcgctgccatgaacttcggccaggaggccatcgcggccttctgcgagaagcaggcc
gaattcctggccatggtggctcccgagccccgcgaatggcccatccatgtgcccgacgcc
tccatcgccgagcgcgtcgacgcccacttcgacgaaatgtccgcagccctcaaggatgcc
gacaagcagtcccgcatcgccaaggtcgaggagctgaaggccgccatcaaggccaacgac
ttctccgaggaggagcaggccgcttggggttccgacatcgccgcggccctcaagtccctt
gagaagcatgccatgcgccgcatggtcatcgagaccggcgaacgtgccgacggccgcgcg
gccgacgagatccgtccgctgtacatccgtcccggctatctgccccgcgtccacggctcc
ggcctgttccagcgcggccagacccaggccctgtccgtgtgcaccttgggccttctcaac
gaggcccagcgtctggacaccatcgacccggccacgggcaagcgctacatgcatcagtac
aacttcccgccgtactgcaccggcgaagtcggccgcatgggcgcccccaagcgccgcgag
gtcggccacggtgcgctggcagagcgcgccatcctgcccgtgctgccttccgaggacgag
ttcccttacgccatccgcgtggtctccgagatcctcgagtccaacggctcttcctccatg
gcatccacctgcggttcctgcctggccctcatggacgccggcgtgcccatcaaggcgccc
gtctccggcatcgccatgggcctgatcaaggaggaggacggcgtggtcatcctgtccgac
atccagggtcttgaggacttcctgggcgacatggacttcaaggtgaccggcaccgccaac
ggcatcacggcgctccagatggacaacaaggcccgcggcctgtccaccgagatcctgggc
cgtgcgctgcagcaggccaaggagggccgtgcccacatcctgaacgccatgctggccgag
atccccggtcctcgcgaggagctgcgtgacaccgcgccccgcatcgagaccatccacatc
cccgtggacaagatccgcgaggtcatcggcaagggtggcgaaaccatccgcggcatccag
gattccacgggtgcttccatcgagatccaggaagacggcaccgtgcacatcgcctccgtc
gaccaggaggccggccgcgccgccaaggccgcagtcgaggccatcgtcaaggagcccgag
gtgggcgaggtgtacgaaggcaccgttgtcggcatccagaccttcggcgcgttcgtcaag
ctgacgccatccaaggacggcctgctccacatcagccgcatggccaacggccgcgtcagc
aaggtggaagacgtcctgaacatgggcgacaccgtgaaggtccaggttatcgaaatcgat
ccgaagagcggcaaggtttctttggaccgtcttgagaagccggatgcgccggaaggctcc
gagcccgctcacaacggccgcgaggagcgcggcaacggccgcgatcgccgtcccggccgc
ggcaaccgcaacaacggcaacgaggaccgcggcggagacaaccgcaagccccgtcgtcgc
caccagcagtaa
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