Slackia heliotrinireducens: Shel_19900
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Entry
Shel_19900 CDS
T00981
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shi
Slackia heliotrinireducens
Pathway
shi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Shel_19900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shi03021
]
Shel_19900
03400 DNA repair and recombination proteins [BR:
shi03400
]
Shel_19900
Enzymes [BR:
shi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Shel_19900
Transcription machinery [BR:
shi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Shel_19900
DNA repair and recombination proteins [BR:
shi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Shel_19900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_A_CTD
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ACV23004
UniProt:
C7N7W9
LinkDB
All DBs
Position
complement(2220513..2224904)
Genome browser
AA seq
1463 aa
AA seq
DB search
MTEFDVNNFSALRISLASAEDIRSWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDW
ECSCGKYKRVRFKGIVCERCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGSPSRLGYLL
DIPPKELEKVLYFASAIITWVDEEARDEDADDLRDELAADLEELDAERDRLIEATRRLSV
DYVPEDDDFEDDIDDDERLTPEEVAEEIADIYEEYNERKELRSEALDAFMRIAPKQLIPD
EALYREIRLNYSDYFHGGMGAEAVRELLEAIDLEKVSEELKEIVETGKGQKRLKAVKRLK
VVDAFLKSDNSPADMILDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL
LDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDTLKGKQGRFRQNL
LGKRVDYSGRSVIVVGPNLKLHQCGLPQQMALELFKPFVMKRLVELEYAANIKAAKRAVD
RGASYVWDVLEEVIQDHPVLLNRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFD
GDQMAVHVPLGNEAQAEARVLMLSSNNIKSPAHGRPLTIPTQDMVIGMYYLTTPRDGFPG
EGRTFIDFDDALNAYDAHADVDLQAKINVRLSRDVKVANSFDELEEHKAGERIQTTIGRI
IFNSVLPEDYPFVNFVVDKKQIGRLIEDCCNRYSLSEMTPILDGIKNLGFHYATRAGITV
SVYDATIPPEKESILAEADKKVAAIDEDYEWGILNEDDRHQQVVDIWNEANEAVGEAMDK
NFDRNNPIYMMATSGARGNIKQIRQLAGMRGLMADPKGEIIDRPIKANFREGLSVLEYFI
STHGARKGLTDTALRTADSGYLTRRLVDVAQDVIVREIDCGSTEGVPYPLFNEKGDIDGN
LIGRCMNEGAGHLAAGDYIASMDDLKQLVEAGVTEVNIRTVMTCHAERGVCQKCYGWDLA
NGRPVNIGTAVGIIAAQSIGEPGTQLTMRTFHAGGVAGDDITHGLPRVTELFEARKPKGL
AVLAEIAGTLQVTGDKNTKTLTIHDQEGNVREYVVSARTQLQAGVRDGNQVKVGQQLTKG
SVNPHDLLRLTDPNTTLRYIVSQVQDVYVSQGVDINDKHIEVIARQMLRKVAVMSAGDSL
LLPGRQVNRYEFERIANELIAEGKEPPVGQPLLLGITKASLATDSFLSAASFQETTKVLT
DAAIEGKTDTLAGLKENVIIGKPIPAGTGLPRYHKVGLTYHGQPVSGIDNESLPDVAPSE
LREIEELLPQPQDWSLDDTYAGYSNMYGTNSYRGLRGQKLSDEDARLYLYDDLGVSQRWA
NKFSEAGIETVGDLVGYTEDELLRIEGIGAKALEELKAGLQDHGLESLLEDDLTATNDEM
SQLLDMVFSPDDTVLIGGDAPATFNTDGEEMLGEALPPRSYHRDLSELDALLGGLGDFGF
GETSASAEADDEEEDEEEDDEEE
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaattcgacgtgaacaacttctctgcgctgcgcatctccctggccagcgccgaa
gatattcgcagctggtctcatggcgaggtcaaaaagcccgagaccatcaactaccgtacg
ctcaagcccgagaaggacggtcttttctgtgagaagatcttcggtcccaccaaggactgg
gagtgcagctgcggcaaatacaagcgcgtccgtttcaagggcatcgtctgcgagcgctgc
ggcgtcgaggtcactcgcgccaaggtgcgccgcgagcgcatgggccacatcgagctggca
gctcccgtgagccatatctggtacttcaagggcagccccagccgtcttggctacctgctg
gacatcccgcccaaagagctggagaaggtgctgtacttcgcatccgccatcatcacctgg
gttgacgaggaagcccgcgacgaagacgccgacgacctgcgcgatgagctggccgccgac
ctcgaagagctggacgccgagcgtgaccgcctgatcgaggccacccgccgtctgtccgtg
gactatgtgcccgaggacgacgacttcgaagacgacatcgacgacgacgagcgcctgacc
cccgaagaggtggccgaggaaatcgccgacatctacgaagagtacaacgagcgcaaggag
ctgcgttccgaggctctggacgccttcatgcgcatcgcccccaagcagctcattcccgac
gaggccctgtaccgtgagattcgcctgaactacagcgattacttccacggcggcatggga
gccgaggccgtccgcgaactgctggaggccatcgacctggagaaggtgtccgaggagctc
aaggaaatcgtcgagactggcaagggccagaagcgcctgaaggccgtcaagcgcctgaag
gtcgtggacgcgttcctgaagtccgacaacagcccggccgacatgatcctggacgtcatc
ccggttatcccgcccgatctgcgccccatggtgcagctcgacggcggccgcttcgccacg
tccgacctgaacgacctgtaccgtcgcgtcatcaaccgcaacaaccgcctcaagcgcctg
ctggacctgggcgcccctgagattatcgtaaacaacgagaagcgcatgcttcaggaggcc
gtcgacagcctgttcgacaacggccgccgcggccgccccgtcacgggccccggcaaccgt
cctctgaagtcgctgtccgacaccctcaagggcaagcagggccgcttccgtcagaacctg
ctcggcaagcgcgtcgactactccggccgtagcgttatcgtcgtcggcccgaacctgaag
ctgcaccagtgcggtctgcctcagcagatggccctggaactgttcaagcccttcgtcatg
aagcgcctggtcgagctcgagtacgctgccaacatcaaggctgcaaagcgtgccgtcgac
cgtggcgccagctacgtgtgggacgtcctcgaagaggtcattcaggatcacccggtcctg
ctgaaccgcgcacctacgctgcaccgtctgggtattcaggccttcgagcctgtcctggtc
gagggcaaggccatcaagctgcatccgctggtttgcaccgcgttcaacgcagacttcgac
ggcgaccagatggccgtccatgtgcctctgggtaacgaggctcaggccgaggcccgcgtg
ctcatgctgtcttccaacaacatcaagagcccggcccatggccgtccgctgaccattcct
acccaggacatggttatcggcatgtactacctgaccacgcctcgcgacggattcccgggc
gagggccgcaccttcatcgacttcgacgacgccctgaacgcctacgacgcccacgccgat
gtggacctgcaggccaagatcaacgtgcgtctgagcagggacgtcaaggtcgcgaactcc
ttcgacgagctcgaggagcacaaggcaggcgagcgcatccagaccaccatcggccgcatc
atcttcaactcggtgctgcctgaggactatccgttcgtcaacttcgtggtcgacaagaag
cagatcggccgcctgatcgaggactgctgcaaccgctacagcctgtccgagatgacgccg
attctcgacggcatcaagaaccttggcttccactacgccacccgcgcgggcattacggtt
tccgtctacgacgcgaccatcccgcccgagaaggaatccatcctggccgaggccgacaag
aaggtcgccgccatcgatgaggactacgagtggggtattctgaacgaagatgaccgccac
cagcaggtcgtcgacatttggaacgaggccaacgaggccgtcggcgaggccatggacaag
aacttcgaccgcaacaaccccatctacatgatggcgacgtccggcgctcgaggcaacatc
aagcagattcgtcagctcgccggcatgcgcggcctgatggccgacccgaagggcgagatc
atcgaccgacccattaaggcgaacttccgcgaaggcctgtccgtgctggagtacttcatc
tccacccacggcgcccgtaagggtctgaccgacaccgctctgcgtaccgccgactccggt
tacctgacccgtcgtctggtcgatgtcgcacaggacgtcatcgtccgcgaaatcgactgc
ggtagcaccgagggcgttccctacccgctgttcaacgagaagggcgacatcgacggcaac
ctcatcggccgctgcatgaacgagggtgcgggacacctggctgcaggcgactacatcgct
tccatggacgacctgaagcagctcgtcgaagccggtgtcaccgaggtcaacatccgtacg
gtcatgacctgccatgccgagcgcggcgtgtgccagaagtgctacggttgggacctggcc
aacggccgccccgtcaacatcggcacggctgtcggcatcatcgcggcccagtccatcggc
gagcccggcacgcagctgacgatgcgcacgttccacgccggcggcgtcgcgggcgacgac
atcacgcacggtctgcctcgtgtcaccgagcttttcgaagcccgtaagcccaagggcctg
gccgttctggctgaaatcgccggtacgctgcaggtcacgggtgacaagaacaccaagacc
ctgaccatccatgaccaggaaggcaacgtccgcgagtacgtggtttccgcccgtacgcag
ctgcaggcaggcgtccgcgacggcaatcaggtcaaggtgggccagcagctcaccaagggt
tccgtgaacccccacgacctgctgcgtctgaccgacccgaacaccacgctgcgctacatc
gtgtcccaggtccaggacgtgtacgtctcccagggcgtggacatcaacgacaagcacatc
gaggtcatcgcacgccagatgctgcgcaaggtggccgtcatgtccgcaggcgactccctc
ctgttgcctggccgccaggtgaatcgctacgagttcgagcgcatcgccaacgagctcatc
gccgaaggcaaagagccgcccgtgggccagccgctgctgttgggcatcaccaaggcgtct
ctggccaccgactcgttcctgtccgccgcatccttccaggaaaccaccaaggtcctgacg
gatgccgctatcgagggcaagaccgacacgctggccggcctgaaggagaacgtcatcatc
ggcaagccgattcccgccggtacgggcctgcctcgctaccataaggtcggcctgacctac
catggtcagccggtgtccggcatcgacaacgagtcgctgcccgatgtcgctccctccgag
ctgcgtgagatcgaggaactgctgccccagccgcaggattggtcgctggacgacacctac
gccggctactccaacatgtacggcaccaacagctaccgcggcctgcgcggccagaagctg
tccgacgaggatgcccgcctgtacctctatgacgacctgggagtttcccagcgctgggcc
aacaagttcagcgaggccggcatcgagaccgtgggcgatctggtcggctacaccgaagac
gagctgctgcgtatcgaaggcatcggcgccaaggctctcgaggagctcaaggcgggcctg
caggaccatggtctggaaagcttgctcgaggatgacctcacggccacgaacgacgagatg
agccagctgctcgacatggtcttcagccccgacgacacggtgctcatcggcggcgacgcc
ccggcaaccttcaacaccgacggtgaggagatgctgggcgaggccctgcccccgcgttca
taccaccgcgacctgagcgagctcgacgctctgctcggtggtctgggcgacttcggattc
ggcgagacctccgcttcggccgaggctgacgacgaagaagaagacgaagaggaagacgac
gaggaggagtaa
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integrated database retrieval system
