Slackia heliotrinireducens: Shel_22900
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Entry
Shel_22900 CDS
T00981
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shi
Slackia heliotrinireducens
Pathway
shi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shel_22900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shi03019
]
Shel_22900
Enzymes [BR:
shi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shel_22900
Messenger RNA biogenesis [BR:
shi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shel_22900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACV23300
UniProt:
C7N178
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All DBs
Position
2538536..2540509
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AA seq
657 aa
AA seq
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MKENTIATFDESGLSATALAAVYDLGYEEPTPIQQQAIPVVLEGRDLIAAAKTGTGKTAA
FALPTMDKLPYAGKGEGPVMVIVTPTRELAMQISEVCETIAKRTNHRVVTLLGGVSYTPQ
IKKLRSGCDIIIATPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATP
SERQTLLFSATIDRSQDKVMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRREKPALLNA
FIREKGGFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHV
IVATDVLARGIDVPEVDYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDTKNLLR
SIQKFIGEDIQVMEFKAGEDAYEPVGKDHALAASEEEHAPKRKDRDKKNGKKGGRKHDDR
GGKKGGRKHDDREGARDDAPKGGKKKRKGNETNAEAKRARKQEGRDAEEQFMQGGRMPMK
RNTGEHTYNYAAFVGGKDGDSFKSKDKKSAKPGRGSKDSFQKRDDRNDRGHGKKKDRGYA
KGGNGAKGGHGKRDERGGRSEEFRGEERYRYDRSGDDRFNRHSNERFDRGGRGGKRSGSS
RPQSTRPTHRTDGASRNEGRKPFKSKVGRGSGGGHASDANRGGRRGSERSGNFRGRR
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggagaataccatagctacgttcgacgaatctggcctttcggccactgcgcttgct
gccgtctacgacctcggctacgaagagccgacgcccatccaacagcaggccatccccgtt
gtgctggagggtcgcgacctcatcgcggccgccaagaccggcaccggtaaaaccgcagca
tttgcgctgcccaccatggacaagctgccttacgccggcaagggcgaaggcccggtcatg
gtcatcgtcacgcccacccgtgagctggccatgcagatttccgaggtgtgcgaaaccatc
gccaagcgcaccaaccaccgcgtcgtcacgctgctgggcggcgtgtcctacaccccgcag
atcaagaagctgcgctccggctgcgacatcattatcgccacgcccggacgcctgctggac
ctcatgcgccagcacgaagccgaccttgacctggtgcaggtgctggtgcttgacgaagcc
gaccgcatgctcgacatgggcttttggccccaggtcagcgagattgtcgacgcaacgccg
tcggagcgccagacgctgctcttttcggcgaccatcgaccgcagccaagacaaggtcatg
ttctcgctgctcaaccaccccgaaatcatcgaaatcagccaccgcggcgacaccgccgac
ctggtcgaccaatacatcatctggaccggccgtcgcgagaagccggcgctgctgaacgcg
ttcatacgcgagaagggcggcttccgcgtcatcgtcttcaccaagaccaagggcggagca
gacaactgcacccgtcgcctgtgcaaaatcggcatcggcgccgaagccattcacgccgac
cgcagccaggcccagcgccagcgcgctctggaacggttccgcgaaggcaagacccacgtg
atcgtggccaccgacgtgcttgcccgcggcatcgacgtgcccgaagtcgactacgtcgtt
aactacgacctgcccatgatgcccgaggattacgtccatcgcatcggccgcaccggccgc
gcaggcgtggccggatacgcggtgtccttcgtcaccccggacaccaagaacctgctccgc
agcatccagaagttcatcggcgaagacatccaggtcatggagttcaaggccggcgaagac
gcttacgagcctgtaggcaaggaccatgcgctggcggcttctgaagaggagcacgcaccc
aagcgtaaggaccgcgacaagaagaacggcaagaagggcggtcgcaagcacgacgaccgc
ggcggcaagaagggcggacgcaagcacgacgaccgcgaaggcgcccgcgacgacgcaccc
aagggtggcaagaagaagcgcaagggcaacgagaccaacgccgaagccaagcgcgctcgc
aaacaggagggtcgcgacgccgaagagcagttcatgcagggcggccgcatgcctatgaag
cgcaacaccggcgaacacacctacaattacgctgccttcgtcggtggcaaggacggcgac
tccttcaagtccaaggacaagaagagcgccaagccgggccgcggatcgaaggactccttc
cagaagcgcgacgaccgcaacgaccgcggtcatggcaagaagaaagaccgaggctacgcc
aaaggcggtaatggtgccaagggcggccacggcaagcgcgacgagcgcggcggacgttcc
gaggaattccgcggcgaagagcgctaccggtacgatcgcagcggcgacgatcggttcaac
cgccattccaacgaacgcttcgaccgcggcggacgcggcggcaagcgcagcgggagctct
cgcccccagagcacgcgccccacgcaccgcaccgacggcgcgtcccgcaacgagggtcgc
aagccgttcaagagcaaggtaggccgcggctcgggcggcggacacgcctccgatgccaac
cgcggcgggcgccgtggcagcgagcgttccggcaacttccgcggacgccggtaa
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