Slackia heliotrinireducens: Shel_23670
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Entry
Shel_23670 CDS
T00981
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
shi
Slackia heliotrinireducens
Pathway
shi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shel_23670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shi03021
]
Shel_23670
03019 Messenger RNA biogenesis [BR:
shi03019
]
Shel_23670
Transcription machinery [BR:
shi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Shel_23670
Messenger RNA biogenesis [BR:
shi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Shel_23670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Spore_III_AA
AAA_25
Rho_N
SAP
S1CSD-TOTE-2
OB_RNB
eIF-3_zeta
AAA
Motif
Other DBs
NCBI-ProteinID:
ACV23376
UniProt:
C7N1T5
LinkDB
All DBs
Position
complement(2621933..2623990)
Genome browser
AA seq
685 aa
AA seq
DB search
MSDNLTPEETAPEAVEAPKKRTARRTAKKTAEAVPEATTQEVSADAEPVKKPRRRTVKKA
DEASAAETPATEAPAEEAPKRRGRPRKAVAEPATAPAAEAPATETPAEEAPKRRGRPRKT
AVKENPTAEAAPEAAPEVAPEAAPAMAEPAAQPETAADSADVAPAPTAAEAEAEERPLPK
RRPRARAHTVETKSSEAAADAQAQGESQPAADSSDGKRQQFQKQNKQNKQQGKQNNKQQQ
NGKQQRRQRRNNAQPTGPSVSLEELNELKVAELREKAELLGVDFAGLKKASLVEAVFEAT
KKAEGIFEVEGILDILQDGYGFLRTGGYLPGENDIYVGTALIRRNGLRKGDYVKGQTRPA
RDNDKYAALQTIHSVNGKSLDDLAGRPRFGDLTPVFPDEILKMEHGRNTTTARVIDLVSP
IGKGQRGLIVSPPKAGKTTILKDIAAAISVNNPEVHLMCLLVDERPEEVTDMQRSIKGEV
IASTFDMPTENHIVVSELVIERAKRLVEDGQDVVILLDSLTRLARAYNLAQPASGRILSG
GVDSAALYPPKKFLGAARNIEGGGSLTILASALIETGSKMDEVIFEEFKGTGNMELKLDR
NLADRRIFPAIDPVQSGTRKEDLLLNPQEAPLIWAVRRILANMNNTERATDMLIKSLRQT
KDNQEFLIRTAKKAQTTRNMDNMEL
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaatctgacaccggaagagactgcccccgaggccgtcgaggctcctaagaag
cgcactgcccgccgcaccgccaagaaaactgcggaagccgttcccgaggcaaccacgcag
gaggtgtctgccgacgccgaacctgtgaaaaagcctcgccgccgtacggtgaagaaggcc
gacgaggcctccgcggcggaaacgcccgcaacggaagcccctgccgaagaggcgcccaag
cgtcgcggacgtccccgcaaagccgtcgcggagcccgcaacggcacctgccgccgaggct
cctgcgaccgaaacccctgccgaagaggcgcccaagcgtcgcggacgtccccgcaagacg
gccgtcaaggagaacccgacagccgaggctgcgcctgaagccgcgcccgaggttgctccc
gaggctgcgcctgccatggccgagcctgcagcccagcccgaaactgcagccgactccgcc
gacgtcgcccctgctcccaccgctgccgaggccgaggccgaagagcggccgctgcccaag
cgccgcccccgtgcgcgcgcccacaccgtcgaaaccaagagctccgaagccgctgcagat
gcgcaggcccagggcgaatcgcagcccgctgcggattcctccgacggcaagcgccagcag
ttccagaaacaaaacaagcagaacaagcagcagggcaagcagaacaacaaacagcagcaa
aacggcaagcagcagcgccgccagcgccgcaacaacgcccagcccaccggcccctccgtc
tctctggaagagctcaacgagctcaaggtggccgagctgcgtgagaaggccgagctgctc
ggcgtcgatttcgctgggttgaagaaggcgtctttggtggaggccgtgttcgaagccacg
aagaaggctgaaggcatcttcgaggtcgagggcattctggatatcctccaggacgggtac
ggattcctgcgcaccggcggctatctgcccggtgagaacgacatctacgttggcacggca
ctcatccgccgcaacggcctgcgcaaaggcgactacgtcaaggggcagacgcgtccggcg
cgcgacaacgacaagtatgccgcgttgcagaccatccactccgtcaacggcaagtccctg
gacgaccttgcgggacgtccgcgcttcggcgatctgaccccggtgttcccggacgagatt
ctcaagatggagcacggccgcaataccaccacggcccgcgtcatcgatttggtgtcgccc
atcggcaagggccagcgcggtctgatcgtgtcgcctccgaaggccggcaagaccaccatc
ctgaaggatatcgccgctgctatcagcgtgaacaaccccgaggtgcacctcatgtgcctg
ctcgtcgacgagcgtcccgaggaagtcaccgacatgcagcgctccatcaagggcgaggtc
atcgcatccaccttcgacatgcccaccgagaaccacatcgtggtgtccgaactggtcatc
gagcgtgcgaaacgcctggtggaggacgggcaggacgttgtcatccttctggacagcctg
acccgtctggcccgcgcctacaacctggcgcagcctgcgtctgggcgcattctgtccggt
ggcgtcgactccgcagccctgtatccgcccaagaagttcttgggcgccgcccgcaacatc
gaaggcggcggcagcttgaccatcctggcatcggccctgatcgaaaccggctcgaagatg
gacgaggtcatcttcgaggagttcaagggcacgggcaacatggagctcaagctcgaccgc
aacctggccgaccgtcgcatattcccggccatcgacccggtgcagtccggcacccgcaag
gaggacctgctgctcaatccgcaggaggccccgctcatctgggccgttcgccgcattctg
gccaacatgaacaacaccgagcgtgccacggacatgctcatcaagtcgctgcgccagacc
aaggacaaccaggagttcctcatccgcaccgccaagaaagcgcagaccacgcgcaacatg
gacaacatggagctttag
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