Shigella sp. PIB: LXH19_11805
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Entry
LXH19_11805 CDS
T10707
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
shig Shigella sp. PIB
Brite
KEGG Orthology (KO) [BR:
shig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shig03019
]
LXH19_11805 (hrpA)
Enzymes [BR:
shig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LXH19_11805 (hrpA)
Messenger RNA biogenesis [BR:
shig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LXH19_11805 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
ResIII
PhoH
DUF6145
AAA_16
NTPase_1
AAA_23
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
USJ80239
LinkDB
All DBs
Position
complement(2472030..2475932)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDHAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHVFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQCNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttacggccttgcagcagcggctggattcgctgatg
ctgcgcgacagactgcgtttttctcgccgtctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccatgcggcagggaaa
gtcctgctgcgtgaagcggcacgaccggaaatcacttatccggacaatttgccggttagt
cagaaaaagcaggacattctcgaagcgattcgtgatcaccaggtggtgatcgtcgccggg
gaaacgggttccggtaaaacgactcagctaccgaaaatctgtatggagctgggccgcggg
attaaagggctgatcggccatacccagccgcgtcgtctggcggctcgaacggtggcgaac
cgtattgcggaagagctgaaaacggagccgggtggttgcatcggttacaaagtgcgtttc
agcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcg
gagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcgcac
gaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcggcgt
cctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattatcgaagtctccggccggacctatccggtggaagtgcgctat
cgcccgattgttgaagaagccgatgataccgagcgcgatcagttgcaggcgatttttgac
gccgtagacgaactgagccaggaaagccctggcgacattctgatctttatgagcggtgag
cgggaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaaatc
ttgccgctttatgcgcggctttcgaacagcgaacagaaccgcgtgttccagtcgcacagt
ggacggcgcattgtgctggcgaccaacgtcgcggaaacgtcgctgaccgtaccggggatt
aaatacgttatcgacccaggtacggcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgagcccatttcgcaggcgtctgccaaccagcgtaaaggccgctgt
ggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctctcgcgc
ccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttacagatg
accgcgctggggttgggcgatatcgccgcgttcccatttgtcgaagcaccggataaacgt
aatatccaggatggcgtgcgtctgctcgaagagctgggcgcgatcaccacggatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgatcct
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatgatt
atcacgtccgcgctctccatccaggatccgcgcgaacgaccgatggacaaacagcaggca
tcggacgaaaaacatcgtcgcttccacgacaaagaatccgacttcctcgcgtttgtaaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttcaaacgccttccgtcgcctg
tgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacccag
ttgcgccaggtggtgaaagaacttggtattccggttaacagcgaaccggcggaatatcgc
gaaattcacattgcgttgctgacgggtttgctttcccatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccattttccccggttccggctta
tttaaaaagccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
gggcgcattgctgcgcgtatcgaccctgaatgggtagaacccgttgctcagcatttgatt
aaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgctgcgcgtaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactggcag
acgcgccacgtattcttccgtgaaaacctgaaactgcgggccgaagtggaagagctggaa
cacaaatcacgtcgccgcgatattctggttgatgacgaaacgctgtttgagttctacgac
cagcgcatcagccacgatgtaatctccgctcgtcacttcgatagctggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaaaatcagcaagctggattacccgaacttctggcatcagtgcaatctcaagctgcgt
ttgagctatcagtttgagcccggcgcggacgcggacggtgtgaccgtgcatattccgctg
ccgctgcttaatcaggtagaagagagcgggtttgaatggcaaatccccggcctgcgtcgt
gaactgatcatcgcactgattaaatcgttgccgaaaccggtacgccgtaattttgtgccc
gcgccaaactacgccgaagcgtttttaggccgcgtcacaccgctggagttaccgttgctc
gacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagactgg
cactgggatcaggtgcctgatcacctgaaaatcaccttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctctctacaagatctgaaagatgcgctgaaaggcaaagtg
caggaaacgctgtctgcggtggcggatgacggtatcgagcagagcggcttacatatctgg
agttttggtcagctgccggaaagctacgaacagaagcgtggcaactataaagtgaaggcg
tggccagcgctagtggatgaacgcgacagcgtggcgatcaaactgtttgataatccgctg
gaacaaaagcaggcaatgtggaacggtcttcgccgtctactgctgctgaatattccctcg
ccaatcaaatatttgcatgagaagttgccaaacaaagccaagctgggactttactttaac
ccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggggtggatcaactg
atcgacgccaatggtggcccggtctggacggaagaaggttttgctgcgctgcatgaaaaa
gtccgtgctgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatcctc
actgcggtgttcaatatcaacaaacgcctgaaagggcgggtggatatgaccatggcgctg
gggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcactggt
aacggcttcaaacggttgggcgatacgctgcgttatttgcaggcgattgaaaaacggctg
gaaaaactggcggttgacccacatcgcgaccgtgctcagatgctgaaagtcgaaaatgtc
cagcaggcgtggcagcaatggatcaacaaactgccgcccgcacgtcgtgaggatgaagac
gtgaaagagatccgctggatgatagaagagctgcgcgtcagctacttcgctcaacaactt
ggtacgccttatccgatttcggataagcgtattttgcaggcgatggagcagattagcggt
taa
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