Shigella sp. PIB: LXH19_18035
Help
Entry
LXH19_18035 CDS
T10707
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
shig Shigella sp. PIB
Brite
KEGG Orthology (KO) [BR:
shig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shig03019
]
LXH19_18035 (hrpB)
Enzymes [BR:
shig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LXH19_18035 (hrpB)
Messenger RNA biogenesis [BR:
shig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LXH19_18035 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_25
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
USJ81370
LinkDB
All DBs
Position
complement(3801766..3804195)
Genome browser
AA seq
809 aa
AA seq
DB search
MSSLPVAAVLPELLTALDCASQVLLSAPTGAGKSTWLPLQLLAHSAIHGKIILLEPRRLA
ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDSLQQMLPEAPVVISEGRS
FPVERRYLPLPAHQRFDEAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGSDV
LLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDP
RTGLTRLITQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERAAAQSEPEILQSDLSGL
LMELLQWGCSDPAQMSWLDQPPTVNLQAAKRLLQMLGALDGERLSVHGQKMAALGNDPRL
AAMLVSAKSDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRG
GEADSSLIAPLLAGAYADRIARRRGQDGRYQLANGMGAMLDADDALSRHEWLIAPLLLQG
SASPDARILLALPVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPL
AKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAT
LETWLLPHMSGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYH
EDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWKGAYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcgttgcccgttgctgccgtcttacctgaattacttaccgctctcgattgtgca
tcgcaggtgttattaagtgcgccgaccggggccgggaaatcaacctggctgccgctgcaa
ctgctggcgcattcagctattcacgggaaaatcattctgctggagccgcgtcgtctggcg
gcgcgtaacgttgcgcaacggctggcggagctgcttaacgaaaagccaggcgataccgtt
ggctaccggatgcgtgcgcaaaactgcgtcgggccgaatacccgcctggaagtggttacc
gaaggcgtgctgacgcgcatgatccagcgtgacccggaactgagcggtgttggattggtg
atccttgatgagtttcatgagcgcagcttgcaggcggatttggcgttggcgctgttactc
gatgtgcaacaaggtctgcgtgatgaccttaaactgctgattatgtcggctacgctggac
aacgacagcttgcagcaaatgctgccagaagcgcccgtcgtcatctcagaagggcgctcg
tttccggttgaacgccgttatttaccgctgcccgcgcatcagcgttttgacgaagccgtt
gcggtagccaccgccgaaatgctgcgtcaggaaagtggatcattactgttatttttacct
ggcgtcggagaaattcagcgcgtgcaggaacaactggcttcgcgcatcggcagtgatgtg
ttgctctgcccgctgtatggcgcgttgtcgctgaacgatcagcgaaaagcgatcctcccg
gcaccgcaagggatgcgcaaagtggtgctggcgaccaatattgctgaaaccagtttaacc
attgaaggtattcgtctggtggtggattgtgcccaggagcgtgtggcgcgttttgatccg
cgcacggggcttacgcggttgattactcaacgcgttagtcaggcatccatgacgcagcgt
gccgggcgcgccgggcgtctggagccgggtatctgcctgcatttaatcgccaaagaacaa
gcagaacgcgctgccgcgcaaagtgaaccggagatattacaaagcgatctttccggtttg
ctgatggaattactgcaatggggatgcagcgatccggcgcagatgagctggctggatcaa
ccgccaacggtgaatctacaggccgcgaaacggctgttacaaatgctgggggcactggac
ggtgaacggcttagtgtgcacgggcaaaaaatggcggcgctgggtaacgatccgcgttta
gcggcaatgctggttagcgcgaagagcgacgacgaagctgctaccgcggcaaaaattgcc
gctattctcgaagagccgccacggatgggcaatagtgacctgggcgtggcgttttcgcgc
aatcaaccagcctggcagcaacgtagtcagcaactgttaaaacgtttaaacgtacgcggc
ggtgaggcagacagttctcttatcgcgccgctacttgccggggcgtatgccgatcgcatt
gctcgtcgccgtgggcaagatggacgctatcaactggcaaacggcatgggggcgatgctc
gatgccgacgatgcgctaagccgccacgaatggttgatcgcaccgttattattgcagggc
agcgcctcgccggatgcgcggattttactggcgctgccggtcgatattgatgagttagta
caacgctgcccgcagctggtacagcagtctgacactgtggagtgggatgacgcgcaaggt
acgctgaaagcctggcgtcggctgcaaatcggtcagttgacggtgaaagtgcagccactg
gcgaaaccctcggaagacgagttgcatcaggcgatgcttaacggcattcgtgataaaggt
ttaagcgtgctcaactggacggcggaagcggaacagctacgcttgcgtttgttatgcgcc
gcaaagtggttgccggaatatgactggccagcggttgatgatgagagtttgttggcgacg
ctggaaacgtggctactgccgcatatgagcggcgtgcattcactacgcggcctgaaatca
ctcgacatttatcaggcactacgcggattacttgattggggaatgcagcaacgtctggat
agtgaattgcctgcgcattacactgtgccgacgggaagccggatcgccattcgttatcat
gaagataacccgcccgcgctggcggtgagaatgcaggagatgtttggtgaggccaccaat
ccgacgatcgctcaggggcgcgtgccgctggtgctggagttgctttcccctgcccaaagg
ccgctgcaaatcacgcgtgatttgagcgccttctggaaaggagcgtaccgtgaggtgcaa
aaagagatgaaagggcgttatcccaaacatgtctggccggacgacccggcaaacacagca
ccaacgcgacgaacgaaaaagtattcgtga
DBGET
integrated database retrieval system
