Shigella sp. PIB: LXH19_18060
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Entry
LXH19_18060 CDS
T10707
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
shig Shigella sp. PIB
Pathway
shig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LXH19_18060 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shig03019
]
LXH19_18060 (pcnB)
Enzymes [BR:
shig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LXH19_18060 (pcnB)
Messenger RNA biogenesis [BR:
shig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LXH19_18060 (pcnB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
USJ84395
LinkDB
All DBs
Position
3807174..3808571
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AA seq
465 aa
AA seq
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MFTRVANFCRKVLSREESEAEQAVARPQVTVIPREQHAISRKDISENALKVMYRLNKAGY
EAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEV
ATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDY
VGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLND
IPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLK
NTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSL
AIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLV
KWWGEFQVSAPPDQKGMLNELDEEPSPRRRSRRPRKRAPRREGTA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atttttacccgagtcgctaatttttgccgcaaggtgctaagccgcgaggaaagcgaggct
gaacaggcagtcgcccgtccacaggtgacggtgatcccgcgtgagcagcatgctatttcc
cgcaaagatatcagtgaaaatgccctgaaggtaatgtacaggctcaataaagcgggatac
gaagcctggctggttggcggcggcgtgcgcgacctgttacttggcaaaaagccgaaagat
tttgacgtaaccactaacgccacgcctgaacaggtacgtaaactgttccgtaactgccgc
ctggtgggtcgccgtttccgtctggctcatgtgatgtttggcccggagattatcgaagtt
gcgaccttccgtggacatcacgaaggtaacgtcagcgaccgcacgacctcccaacgcggg
caaaacggtatgttgctgcgcgacaacattttcggctccatcgaagaagacgcccagcgc
cgcgatttcactatcaacagcctgtattacagcgtggcagattttaccgtccgtgattac
gttggcggcatgaaggatctgaaggacggcgttatccgtctgattggtaacccggaaacg
cgctaccgtgaagatccggtacggatgctgcgcgcggtacgttttgccgccaaattgggt
atgcgtatcagtcctgaaaccgcagaaccgatccctcgcctggctaccctgctgaacgat
attcctcctgcacgtctgtttgaagaatctttgaaactgctgcaagcgggctacggttac
gaaacctataagctgctgtgtgaatatcatctgttccagccgctgttcccgaccattacc
cgctacttcacggaaaatggcgacagcccgatggagcggatcattgaacaggtgctgaag
aataccgatacgcgtatccataacgatatgcgcgtgaacccggcgttcctgtttgccgcc
atgttctggtacccactgctggagacggcacagaagatcgcccaggaaagtggcctgacc
tatcacgacgctttcgcgctggcgatgaacgacgtgctggacgaagcctgccgttcactg
gcgatcccgaaacgtctgacgacgttaacccgcgatatctggcagttgcagttgcgtatg
tcccgtcgtcagggtaaacgcgcatggaaactgctggagcatcctaagttccgtgcggct
tatgacctgttggccttgcgagctgaagttgaacgtaacgctgaactgcagcgtcttgtg
aaatggtggggtgagttccaggtttccgcgccaccagaccaaaaagggatgctcaacgag
ctggatgaagagccgtcaccgcgtcgccgttctcgtcgtccacgcaaacgcgcaccgcgt
cgtgagggtaccgcatga
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