Shigella sp. PIB: LXH19_18490
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Entry
LXH19_18490 CDS
T10707
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
shig Shigella sp. PIB
Brite
Transcription machinery [BR:
shig03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
LXH19_18490 (rapA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
USJ81451
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Position
3903297..3906203
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AA seq
968 aa
AA seq
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MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT
ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL
AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD
NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDET
EGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM
NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR
ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaattgggacttgga
accgttgtcgcggtggatgcgcgaactgtcactttacttttcccatctactggtgaaaac
cgtctgtacgcacgcagtgattcccccgtgacccgcgtgatgttcaaccctggtgatacc
attaccagccatgacggctggcagatgcaagtcgaagaagtaaaagaagaaaatggcttg
ctgacctatatcggtactcgcctggatactgaagagtccggcgtagccctgcgtgaagtt
ttccttgatagcaaactggtgttcagcaaaccgcaggaccgtctgtttgccgggcagatt
gaccgtatggaccgctttgcgctgcgttatcgcgcgcgtaagtattccagcgaacagttc
cgtatgccgtacagcggcctgcgcggtcagcgtaccagcctgatcccgcaccagctcaac
atcgctcatgatgttggtcgccgccacgcgccgcgcgtcctgctcgctgacgaagtcggt
ttagggaaaaccattgaagccgggatgatcctgcatcagcaactgctctctggcgctgct
gaacgtgtgctgattatcgtcccggaaaccttacagcatcagtggctggtagaaatgctg
cgccgtttcaacctgcgctttgctctgtttgatgatgagcgttatgccgaagctcagcac
gatgcttacaacccgttcgacaccgaacagctggtgatttgctcgctggattttgcccgt
cgtagcaaacagcgtctggaacatctctgtgaagccgaatgggatctgctagtggtcgat
gaagcccatcacctggtgtggagcgaagatgcgccgagccgcgaatatcaggccattgaa
caactggcagagcacgtgcccggcgttctgctgctgaccgcaaccccggaacaactgggg
atggaaagccacttcgcccgtctgcgtctgctggacccgaaccgtttccacgattttgcg
caattcgttgaagaacagaaaaattatcgtccggttgcggacgccgttgccatgctgctg
gcaggtaacaaactgagcaatgacgaactgaacatgctcggtgagatgatcggcgagcag
gatatcgagccgctgttgcaagcagcaaacagcgacagcgaagatgcacagagcgcccgt
caggaactggtttccatgctgatggatcgccacggcaccagccgcgtgctgttccgtaac
acgcgtaacggtgtgaaaggcttcccgaaacgcgagctgcacaccattaagctgccgctg
ccgacgcagtatcagacggctattaaagtctccggcattatgggcgcacgcaaaagtgcg
gaagatcgcgctcgcgatatgctctacccggagcgtatttatcaggaatttgaaggtgat
aacgccacctggtggaacttcgatccgcgcgttgagtggctgatgggctacctgaccagc
catcgctctcagaaagtgctggtgatctgcgctaaagctgccactgcgctgcaactggag
caagtactgcgcgaacgtgaaggtatccgcgccgcggtgttccacgaaggcatgtcgatt
attgaacgtgaccgcgctgccgcctggtttgctgaagaagacaccggcgcacaggtactg
ctgtgctcggaaatcggttctgaaggacgtaacttccagttcgccagccacatggtaatg
tttgacctgccattcaacccggatctgctggagcagcgtattggtcgtctggatcgtatc
ggtcaggcgcacgatattcagatccatgtgccttatctggagaaaaccgctcagtcggtg
ctggtgcgctggtatcacgaaggtctggatgcattcgaacacacctgcccgaccggacgc
actatctacgatagcgtatacaacgatctgattaactatctggcttcaccggatgagacc
gaaggctttgacgatctgatcaaaaactgccgcgagcaacatgaagcgctgaaagcacag
ctggaacaaggtcgtgaccgcctgctggaaatccattccaacggtggcgaaaaagcccag
gcactggcagaaagcattgaagagcaggatgacgataccaacctgatcgccttcgccatg
aacctgttcgatattatcggtatcaatcaggacgatcgcggcgacaacatgatcgtgctg
acgccgtccgatcatatgctggtgccggacttccctggcttgtcggaagatggcatcacc
atcaccttcgaccgtgaagtggcgctggcgcgtgaagatgcgcagtttattacctgggag
catccgctgatccgcaacggtctggatctgatcctttctggcgacaccggtagcagcacg
atttcactgttgaaaaacaaagcgttgccggtaggtacgctgttggtggaactgatttac
gtggttgaagcccaggctccgaagcagttgcagctcaaccgcttcctgccgccgacaccg
gtacgtatgctgctggataaaaacggcaacaacctggcggcgcaggtggagtttgaaacc
tttaaccgtcagcttaacgcggttaaccgtcacaccggcagcaaactggttaacgccgtg
cagcaggatgttcacgcgatccttcagttgggtgaagcgcagatcgagaaatctgcccgt
gcactgattgatgccgcacgtaacgaagccgacgaaaaactgtctgccgagctgtctcgt
ctggaagctctgcgtgcagtgaacccgaacattcgtgacgacgaactgaccgccattgag
agcaaccgtcagcaggtaatggaaagcctggatcaggcaggctggcgtctggatgccctg
cgtttgatcgttgtaacgcatcagtaa
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