Shigella sp. PIB: LXH19_21645
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Entry
LXH19_21645 CDS
T10707
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
shig Shigella sp. PIB
Pathway
shig00071
Fatty acid degradation
shig00280
Valine, leucine and isoleucine degradation
shig00310
Lysine degradation
shig00362
Benzoate degradation
shig00380
Tryptophan metabolism
shig00410
beta-Alanine metabolism
shig00640
Propanoate metabolism
shig00650
Butanoate metabolism
shig00907
Pinene, camphor and geraniol degradation
shig00930
Caprolactam degradation
shig01100
Metabolic pathways
shig01110
Biosynthesis of secondary metabolites
shig01120
Microbial metabolism in diverse environments
shig01200
Carbon metabolism
shig01212
Fatty acid metabolism
Module
shig_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
shig00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
LXH19_21645 (fadB)
00650 Butanoate metabolism
LXH19_21645 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
LXH19_21645 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
LXH19_21645 (fadB)
00310 Lysine degradation
LXH19_21645 (fadB)
00380 Tryptophan metabolism
LXH19_21645 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
LXH19_21645 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
LXH19_21645 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
LXH19_21645 (fadB)
00930 Caprolactam degradation
LXH19_21645 (fadB)
Enzymes [BR:
shig01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
LXH19_21645 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
LXH19_21645 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
LXH19_21645 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
LXH19_21645 (fadB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
Motif
Other DBs
NCBI-ProteinID:
USJ82027
LinkDB
All DBs
Position
4593487..4595676
Genome browser
AA seq
729 aa
AA seq
DB search
MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSN
KAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCEC
VLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALK
IGLVDGVVKAEKLIEGAMAILRQAINGDLDWKAKRQPKLEPLKLSKIEAIMSFTIAKGMV
AQTAGKHYPAPITAVKTIEAAARFGREEALNLENKSFVPLAHTNEARALVGIFLNDQYVK
GKAKKLTKDVETPKRAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKLL
NKQLERGKIDGLKLAGVISTIHPTLDYSGFDRVDVVVEAVVENPKVKKAVLAETEQKVRP
DTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAW
ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYL
LDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFDANRFGQKNGLGFWRYKEDSKGKP
KKEEDAVVDDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVY
GLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPEGLRNKARHNEPYYPPVEPA
RPVGDLKTA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgctttacaaaggcgacaccctgtaccttgactggctggaagatggcattgccgaactg
gtatttgatgccccaggttcagttaataaactcgacactgcgaccgtcgccagcctcggc
gaggccatcggcgtgctggaacagcaatcagatctaaaagggctgctgctgcgttcgaac
aaagcagcctttatcgtcggtgctgatatcaccgaatttttgtccctgttcctcgttcct
gaagaacagttaagccagtggctgcattttgccaatagcgtgtttaatcgcctggaagat
ctgccggtgccgaccattgccgccgtcaacggctatgcgctgggcggtggctgcgaatgc
gtgctggcgaccgattatcgtctggcgacgccggatctgcgcatcggtctgccggaaacc
aaactgggcatcatgccgggctttggcggttctgtacgtatgccacgtatgctgggcgct
gacagtgcgctggaaatcattgccgccggtaaagatgtcggcgcggatcaggcgctgaaa
atcggtctggtggatggtgtagtcaaagcagaaaaactgattgaaggggcgatggcgatt
ttacgccaggccattaacggcgacctcgactggaaagcgaaacgtcagccgaagctggaa
ccgctaaaactgagcaagattgaagccatcatgagcttcaccatcgctaaagggatggtc
gcacaaacggcggggaaacattatccggcccccatcaccgcagtaaaaaccattgaagct
gcggcccgttttggtcgtgaagaagccctaaacctggaaaacaaaagttttgtcccgctg
gcgcataccaacgaagctcgcgcattggtcggcatattccttaacgatcaatatgtaaaa
ggcaaagcgaagaaactcaccaaagacgttgaaacgccgaaacgggccgctgtgctgggc
gcaggcattatgggcggcggcatcgcttaccagtctgcgtggaaaggcgtgccggttgtc
atgaaagatatcaacgacaagtcgttaaccctcggcatgaccgaagccgcgaaactgctg
aacaagcagcttgagcgcggcaagatcgatggtctgaaactggctggcgtgatctccacg
atccacccaacgctcgattactctggttttgaccgcgtagatgttgtggtagaagcggtt
gtcgaaaacccgaaagtgaaaaaagccgtactggcagaaaccgaacaaaaagtacgcccg
gataccgtgcttgcgtctaacacttcaaccattcctatcagcgaactggccaacgcgctg
gagcgtccggaaaacttctgcgggatgcacttctttaacccggtccaccgaatgccgttg
gtggaaattattcgcggcgagaaaagctccgacgaaaccatcgcgaaagttgtcgcctgg
gcgagcaagatgggcaaaacgccgattgtggttaacgactgccccggattcttcgttaac
cgcgtgctgttcccctacttcgcgggtttcagccagctgctgcgcgacggcgcggatttc
cgcaagatcgataaagtgatggaaaaacagtttggctggccgatggggccggcatatctg
ctggacgttgtggggattgataccgcgcatcacgctcaggcggtgatggcagcaggcttc
ccgcagcggatgcagaaagattaccgcgatgccatcgacgcgctgtttgatgccaaccgc
tttggtcagaagaacggcctcggtttctggcgttataaagaagacagtaaaggcaagccg
aagaaagaagaagatgccgtcgttgacgacctgctggcagaagtgagccagccgaagcgc
gatttcagcgaagaagagattatcgcccgcatgatgatcccgatggtcaacgaagtggtg
cgctgtctggaagaaggcattatcgccactccggcagaagcggatatggcgctggtctac
ggactgggtttccctccgttccacggcggcgcgttccgctggctggacaccctcggtagc
gcaaaatacctcgatatggcacaacaatatcagcacctcggcccgctgtatgaagtgccg
gaaggtctgcgtaataaagcgcgtcataacgaaccgtactatcccccggttgagccagcc
cgtccggttggcgacctgaaaacggcttaa
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