Shigella sp. PIB: LXH19_21815
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Entry
LXH19_21815 CDS
T10707
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shig Shigella sp. PIB
Pathway
shig03420
Nucleotide excision repair
shig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LXH19_21815 (uvrD)
03430 Mismatch repair
LXH19_21815 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shig03400
]
LXH19_21815 (uvrD)
Enzymes [BR:
shig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LXH19_21815 (uvrD)
DNA repair and recombination proteins [BR:
shig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LXH19_21815 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
LXH19_21815 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
USJ82059
LinkDB
All DBs
Position
complement(4627675..4629837)
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AA seq
720 aa
AA seq
DB search
MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENN
NGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG
TPMVENDSGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttacctgctcgacagccttaatgacaaacagcgcgaagcggtggccgcg
ccacgcagcaaccttctggtgctggcgggcgcgggcagtggtaagacgcgcgtactggtg
catcgtatcgcctggctgatgagcgtggaaaactgctcgccatattcgattatggcggta
acgtttaccaacaaagcggcggcggagatgcgtcatcgtatcgggcagctgatgggcacc
agccagggcggcatgtgggtcggcaccttccacgggctggcgcaccgtctgctgcgtgcg
caccatatggacgccaatctgccgcaggattttcagatcctcgacagcgaggaccagcta
cgcctgctcaaacgcctaatcaaggcgatgaacctcgacgagaagcagtggccgccgcgc
caggcaatgtggtacatcaacagccagaaagatgaaggcctgcgtccgcatcatattcaa
agctacggtaatccggtggagcagacctggcagaaggtgtatcaggcgtatcaggaagcg
tgcgatcgtgcgggcctggtggacttcgccgagctgctgctacgtgctcacgagttgtgg
cttaacaagccgcatatccttcagcactatcgcgaacggtttaccaatatcctggtggac
gaattccaggataccaacaacattcagtatgcgtggatccgcctgctggcgggcgatacc
ggcaaagtgatgatcgttggcgatgacgatcagtcaatctacggctggcgtggagcgcag
gtggagaatattcagcgtttcctcaatgatttccccggtgctgaaactatccgtctggag
cagaactaccgctctaccagcaatattctgagcgccgcgaacgccctgattgaaaacaac
aacgggcgtttgggtaaaaaactgtggaccgatggcgcggatggtgagcctatttccctc
tattgcgcttttaacgaactcgatgaagcgcgttttgtggttaaccgtatcaaaacctgg
caggacaacggcggggcgcttgccgagtgcgccattctctaccgcagcaacgcccagtcg
cgtgtgctggaagaagcactgttacaggcaagtatgccgtaccgtatttacggcgggatg
cgattcttcgaacgccaggaaatcaaagatgcgctctcgtatctgcgcctgattgccaac
cgtaatgacgacgcggcctttgagcgcgtggtgaatacaccaacgcggggtattggtgac
cggacgctggacgtggtacgtcagacatcgcgcgatcgccagttaacactctggcaggca
tgtcgtgaactgttgcaggaaaaagccctcgccggacgtgctgccagtgccttacagcgg
tttatggaactgatcgacgccttagcgcaggaaactgccgatatgccgctgcatgtacag
actgaccgggtaattaaagactccggcctgcgcacaatgtacgagcaggagaaaggcgaa
aaaggccagacgcgtatcgaaaacttagaggaactggtgacggcgacgcgccagttcagc
tacaacgaagaagacgaagatttaatgccgctgcaggcgttcctctcccatgcggcactg
gaagcaggtgaagggcaggcggatacctggcaggacgcggtgcagttgatgacgctacac
tcggcgaaagggctggagttcccgcaggtgtttatcgtcggtatggaagagggtatgttc
ccaagtcagatgtcgctggatgaaggcggacgtctggaagaagaacgccgtctggcctac
gttggcgtaacccgcgcgatgcagaaactgacgctgacctacgcggaaacccgccgtctg
tatggcaaagaggtttaccatcgcccgtcgcgctttatcggcgagctgccggaagagtgt
gtggaagaggtgcgcctgcgcgccacggtaagccgcccggtcagccatcaacggatgggt
acgccgatggtcgagaacgacagcggctacaagctcggccagcgcgtacgccacgctaag
tttggtgaaggcaccatcgtcaatatggaaggcagcggtgagcatagccgtttgcaggtg
gcgttccagggccagggtattaaatggctggtggcggcttacgcccggttggagacggtg
tga
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