Shinella sp. XGS7: LHJ69_07480
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Entry
LHJ69_07480 CDS
T10581
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
shin Shinella sp. XGS7
Pathway
shin03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LHJ69_07480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shin03400
]
LHJ69_07480
Enzymes [BR:
shin01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
LHJ69_07480
DNA repair and recombination proteins [BR:
shin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LHJ69_07480
Prokaryotic type
LHJ69_07480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
UDF36901
LinkDB
All DBs
Position
1646923..1647606
Genome browser
AA seq
227 aa
AA seq
DB search
MSAGWQEVVEAWQASPAGRGLEAFVAQRRAAGAQIYPPEPFRALTLTPLDQVRVVILGQD
PYHGPGQAEGLAFSVPPTLKKLPPSLRNIFKELQRDLDLPPPAHGHLGAWARRGVLLLNT
CLTVEDGAPASHAKKGWEALSDALILRAATDAAPKAFLLWGAHAQAKAQLIEGADTARRH
LVLQANHPSPLSALRPPTPFIGCGHFSRAAAWLAQRGRPMDWSLQDS
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgggctggcaggaggtggtcgaggcctggcaggcctcgcccgcgggccggggc
ctggaggcctttgtggcccagcgccgcgcggccggcgcccagatctatccgcccgagcct
ttccgggcgctcacgctcacgcccctggaccaggtgcgcgtggtgatcctgggccaggac
ccgtatcacggccccggccaggccgaggggctggccttctcggtgccacccacgctcaag
aagctgccgcccagcctgcgcaatatcttcaaggagctgcagcgggatctggacctgccg
ccgccggcccacggtcatctgggcgcctgggcgcgccgcggcgtgctgctgctcaacacc
tgcctgacggtggaggacggcgcgccggccagccatgccaagaagggctgggaagcgctc
agcgacgccctgatcctgcgcgccgcgaccgatgctgcgcccaaggcctttctgctctgg
ggcgcccatgcccaggccaaggcccagctgatcgagggtgctgacacggcgcgccgccat
ctggtgctgcaggccaaccatccatcgccgctctcggccctgcggccgcccacgcctttc
atcggctgcgggcatttctcgcgcgccgcggcctggctggcccagcgtggccggcccatg
gactggagtctgcaggattcgtag
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