Shinella sp. XGS7: LHJ69_07595
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Entry
LHJ69_07595 CDS
T10581
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shin Shinella sp. XGS7
Pathway
shin03020
RNA polymerase
Brite
Enzymes [BR:
shin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LHJ69_07595 (rpoC)
Transcription machinery [BR:
shin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LHJ69_07595 (rpoC)
DNA repair and recombination proteins [BR:
shin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LHJ69_07595 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UDF36920
LinkDB
All DBs
Position
1670712..1674935
Genome browser
AA seq
1407 aa
AA seq
DB search
MNQEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIATLLDMTLKDVERVLYFEAYVVVDPGMTPLKKFSIMSEDDYDAKRAEFGDEFIAL
MGAEGIKKLLEEMDLDIEIDRLRNDMTGSELKVKKNSKRLKVMEAFKKSGIKPNWMVMDV
LPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQE
SVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPEL
KLHQCGLPKKMALELFKPFIYARLDAKGFSSTVKQAKKLVEKEKPEVWDILDEVIREHPV
LLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQMEAR
TLMLASNNVLFPASGEPSIVPSQDVVLGLYYATRERTNGRGEGMVFSDVGEVIRALENRV
VEITAKISVRLTEYSKHKDTGEWIPETKLVDTTVGRALLSEILPKGLPFSNINKALKKKE
ISRLINTSFRKCGLKETVVLADKLLQSGFKLATRAGISIAVDDMLVPKQKYELIERAEKE
VKEIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMAQLAKQKVLDRHGKEVDQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVTENDCGTDNGMNMRALVEGGEVIESLRDRVL
GRVAAIDVIHPETQAVLLPAGNMLDEDVLDVLEQAGVDEIKVRTPLTCDTRFGLCAKCYG
RDLGRGGLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSDGIIGF
NATMRYVTNGKGELVVISRSGEIVITDPHGRERERHKVPYGAILNIKADQTIKAGTILAN
WDPLTRPIITEFAGKAKFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKVVKPQVKL
LDANGNEVKIPGTDHSVTIGFQVGALIQVRDGQDLAPGEVLARIPVEGQKTRDITGGLPR
VAELFEARSPKDVGVLAEQTGTVSFGKETKGKVRLEITDPEGRKHEVLVPKEKNILVHEG
QVVNRGELIVDGAADPQDILRLLGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQML
RRVQIVNSGDSSYIVNEQVERSELLDTNDRLRAEGKLPATYSDVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHDARRAKEAMDDAERR
AIAMQEAEELAAAQMAGVDAPAEGSAE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaacccgcaggtgcctgcgcagacgttcgactcc
atccgcatctcgatcgcgtctccggaaaagatcctttcctggtcgtatggcgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgcgacggtctcttctgcgcg
cgcatcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgc
gagcgcatgggccacatcgagctcgccgcgcccgtcgcccatatctggttcctgaagtcg
ctgccctcgcgcatcgccacgctcctcgacatgacgctgaaggatgtcgagcgcgttctc
tatttcgaagcctatgtggtggtggatccgggcatgaccccgctgaagaagttcagcatc
atgtccgaggacgactacgacgcgaagcgcgccgaattcggcgacgagttcatcgcgctg
atgggcgccgagggcatcaagaagctgctggaggagatggatctcgacatcgagatcgat
cgcctgcgcaacgacatgaccggctccgagctcaaggtcaagaagaattccaagcgcctc
aaggtgatggaagccttcaagaagtcgggcatcaagccgaactggatggtgatggacgtg
ctgccggtgatcccgccggacctgcgtccgctcgttccgctcgacggcggccgtttcgcg
acgtcggacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgtctgaagcgc
ctcatcgagctgcgcgcaccgggcatcatcatccgtaacgagaagcgcatgcttcaggaa
tcggttgacgccctgttcgacaacggccgccgcggccgcgtcatcaccggcgccaacaag
cgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgccagaac
ctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgacgggtccggaactc
aagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaagccgttcatc
tacgcccgcctcgacgccaagggtttctcctcgaccgtcaagcaggccaagaagctggtc
gaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgagcatccggtt
ctcctcaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgaaccgatcctg
gtcgaaggcaaggccatccagttgcacccgctcgtctgcacggccttcaacgccgacttc
gatggcgaccagatggccgttcacgtcccgctctccatcgaggcgcagatggaagcccgc
accctgatgctggcctccaacaacgtgctgttcccggcctcgggcgagccctccatcgtc
ccgtcgcaagacgtggtgctgggcctgtactacgccacccgcgagcgtaccaacggccgc
ggcgaaggcatggtgttcagcgatgtgggtgaagtcatccgcgcgctggaaaaccgcgtg
gtcgagatcaccgccaagatcagcgtgcgcctgaccgagtacagcaagcacaaggacacg
ggcgagtggatccccgagaccaagctggtggacacgaccgtcggccgtgccctgctgtcc
gagatcctgcccaagggcctgccgttctcgaacatcaacaaggcgctgaagaagaaggaa
atctcgcgcctcatcaacacctccttccgcaagtgcggtctgaaggaaaccgtggtgctg
gccgacaagctgctgcaaagcggtttcaagctcgccacgcgcgccggcatctccatcgcg
gtggacgacatgctggtgcccaagcagaagtacgagctgatcgagcgcgccgagaaggaa
gtcaaggagatcgagcagcagtacgtctccggtctggtgacggccggcgagcgctacaac
aaggtcgtggacatctggggcaagaccggtgacgaagtgggcaaggtcatgatggcccag
ctcgccaagcagaaggtcctggaccgccatggcaaggaagtggatcaggagtccttcaac
tccatctacatgatggccgactccggtgcccgcggtagcgcggcccagatccgccagctg
gccggtatgcgcggcctgatggccaagccggacggctcgatcatcgagacgcccattacc
gcgaacttccgtgaaggtctgaacgttctgcagtacttcatctccacccacggtgctcgt
aagggcctggcggatacggcgctgaagaccgcgaactccggctacctgacccgtcgcctg
gtcgacgtgacccaggatctggtcgtgaccgagaacgactgcggcaccgacaacggcatg
aatatgcgtgccctggtcgaaggcggtgaagtcatcgaatcgctgcgcgaccgcgtgctg
ggtcgtgtggcggcgatcgacgtcatccacccggagacgcaagcggtgctgctgcccgcc
ggcaatatgctggacgaggacgtgctggacgtgctggaacaggccggcgtggacgagatc
aaggtccgcactccgctgacctgcgacacccgcttcggtctgtgcgccaagtgctatggc
cgcgatctgggccgtggtggtctggtgaaccagggtgaggctgtgggcgtgatcgccgca
cagtccatcggtgaaccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gcttcgcgtgcggccgtggcttccagcgtggaagccaagtcggacggcatcatcggcttc
aatgccacgatgcgctacgtcacgaacggcaagggcgagctggtggtgatttcccgctcc
ggcgagatcgtcatcaccgacccgcacggccgtgagcgcgagcgtcacaaggtgccttac
ggcgcgatcctgaacatcaaggccgaccagaccatcaaggctggcaccatcctggccaac
tgggatccgctgacccgcccgatcatcaccgagttcgccggtaaggcgaagttcgagaac
gtcgaggaaggcgtcaccgtcgccaagcaggtggacgaagtcaccggtctgtcgaccctg
gtcgtgatcgacccgaagcgccgcggcgcagccaaggtcgtcaagccgcaggtcaagctg
ctggatgccaatggcaacgaggtgaagatccccggtaccgaccactcggtgaccatcggc
ttccaggtcggcgccctgatccaggtgcgcgacggccaggacctggcgcctggtgaggtg
ctggcccgtatcccggtggaaggtcagaagacccgcgacattaccggcggtctgccgcgt
gtggccgagctcttcgaagcccgttcgcccaaggatgtcggcgtgctggccgagcagacc
ggtaccgtgtccttcggcaaggagaccaagggcaaggttcgcctcgagatcaccgatccg
gaaggccgcaagcacgaggtgctggtgcccaaggaaaagaacatcctggtgcacgaaggc
caggtggtgaaccgcggcgaactgatcgtggacggcgctgcagatccgcaggacatcctg
cgcctgctgggcgtggaagcactcgcttcctacctcgtgaacgaaatccaggaagtctac
cgactgcagggcgttgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctg
cgtcgcgtgcagatcgtcaactcgggcgactccagctacatcgtcaacgagcaggtcgag
cgttcggagctgctggataccaacgaccgtctgcgtgccgaaggcaagctgccggccacg
tattccgacgtgctgctgggtatcaccaaggcctcgctgtcgaccgactccttcatctcc
gcggcgtccttccaggaaaccacccgcgtgctgaccgaggctgccatcatgggcaagcgc
gacgagctgcgcggtctgaaggagaatgtgatcgtcggccgcctgatccccgcgggtacc
ggcatggccttccatgacgcccgtcgtgccaaggaagccatggacgacgccgagcgtcgc
gccatcgccatgcaagaagccgaggagctggctgcggcccagatggctggcgtggatgcg
cctgccgagggttcggccgagtaa
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