Shinella sp. XGS7: LHJ69_08250
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Entry
LHJ69_08250 CDS
T10581
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
shin Shinella sp. XGS7
Pathway
shin03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LHJ69_08250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shin03400
]
LHJ69_08250
Enzymes [BR:
shin01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
LHJ69_08250
DNA repair and recombination proteins [BR:
shin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LHJ69_08250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
UDF37043
LinkDB
All DBs
Position
1794569..1795438
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AA seq
289 aa
AA seq
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MSWDERQRAMLEAMGLKVWRAPEPVAAAPVLTPAPTPAPTEAAVMERPASPPPAPASAPR
APAPAPAPAPAPRAVAELLAPGEGLPQRAPRPGLERIAAMDWPQLREAVADCRACQLCEG
RKHTVFGVGHERAHWMIVGEAPGQQEDQQGEPFVGQAGKLLDSMLRALGLSRAEGPPERQ
VFIANTLKCRPPGNRNPEPEELAQCEPFLQRQIALVQPRIILAMGRFAVQSLLRSNEPIG
RLRGRVHEYQGVPLVVTYHPAYLLRNLVDKARAWEDLCLAQDTLERRGS
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgagctgggacgaacgccagcgcgccatgctggaggccatgggcctcaaggtctggcga
gcgcccgagccggtggccgccgcgcctgtgctcacccccgcgcccacccccgcgcccacg
gaggcggccgtgatggagcgtccggcgtcgccgccgcccgccccggcgtctgcgccccgg
gcaccggctcccgcccccgcccccgccccggcgccgcgcgccgtggccgagttgctggct
ccgggcgagggcctgccgcaacgcgcgccgcgcccgggcctggagcgcatcgccgccatg
gactggccgcagctgcgcgaggccgtggcggactgccgggcctgccagctctgcgagggg
cgcaagcacaccgtcttcggcgtgggccatgagcgtgcgcactggatgatcgtgggcgag
gcccccggccagcaggaagaccagcagggcgagccctttgtgggccaggccggcaagctg
ctggacagcatgctgcgcgccctgggcctctcccgcgccgaagggccgccggagcgccag
gtcttcatcgccaacaccctcaagtgccggccgccgggcaaccgcaaccccgagccggag
gagctggcccagtgcgagcccttcctgcagcgccagatcgccctggtgcagccgcgcatc
atcctggccatgggtcgctttgccgtgcagtccctgctgcgcagcaacgagcccatcggc
cgtctgcgcggccgggtgcatgagtaccagggcgtgcccctggtcgtgacctaccacccg
gcctatctgctgcgcaatctggtggacaaggcccgtgcctgggaggacctgtgcctggcc
caggacacgctggagcgccgcggctcatga
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