Shinella sp. XGS7: LHJ69_10230
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Entry
LHJ69_10230 CDS
T10581
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shin Shinella sp. XGS7
Pathway
shin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHJ69_10230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shin03019
]
LHJ69_10230
Enzymes [BR:
shin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHJ69_10230
Messenger RNA biogenesis [BR:
shin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHJ69_10230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UDF37419
LinkDB
All DBs
Position
2233377..2234885
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AA seq
502 aa
AA seq
DB search
MTEETITPPPARFDTLPLDAKLLRAVADQGYATMTPIQAKAIPIVLSGRDVMGAAQTGTG
KTAAFSIPLLQRMLKHENASASPARHPVRALVLAPTRELADQVANNVKAYSKHTNLRVAC
VFGGVDMKPQTLQLKGGVEVLIATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLP
DLQRILSYLPKARQTLLFSATFSPEIKRLAQSYLQSPELVEVARPNATASTVEQRFFSVE
DDDKRRAVIHILRERQIKQAIVFVNSKLGCARLARSFERDGLRTNALHGDKSQDERLKAL
DAFKRGEVDVLVCTDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGIAVTL
VTKSDARLTAEIEKLTKRKIELEALELEDERPRRAPRREGYGESSGASSYAASPAPAPRA
PRPAPASRDPFFDKPYEPSLSDDAKPAWEKSAPAAATAGRGGLSPYIKPKKKVAALFGAK
PAPQPAAAPASQATAQAEAPQA
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaagaaaccatcactccgccgcccgcccgcttcgacacgctgccgctggatgcc
aagctgctgcgtgccgtggccgaccagggctacgcgaccatgacgccgatccaggccaag
gccattccgatcgtgctcagcggccgcgacgtgatgggcgctgcgcagaccggcaccggc
aagaccgcggccttctccattcccctgctgcagcgcatgctcaagcatgagaacgccagc
gcctcgccggcccggcatccggtgcgcgccctggtgctggcgcccacccgcgaactggcc
gaccaggtggccaacaacgtcaaggcctattccaagcacaccaatctgcgggtggcctgc
gtcttcggaggcgtggacatgaagccccagaccttgcagctcaagggtggggtcgaggtg
ctgatcgccaccccggggcgccttctggaccatatcgaggccaagaacgcggtgctcaac
caggttgagtacgtggtgctggacgaggccgaccgcatgctggacatcggcttcctgccc
gatctgcagcgcatcctgagctacctgcccaaggcgcgccagaccctgctgttctcggcc
accttctcgcccgagatcaagcgcctggctcagagctatctgcagagccccgagctggtg
gaggtggcgcggcccaatgccacggcctccaccgtggagcagcgcttcttcagtgtggaa
gacgacgacaagcgtcgcgccgtcatccacatcctgcgcgagcgccagatcaagcaggcc
atcgtcttcgtcaactccaagctgggttgtgcccgcctggcgcgctccttcgagcgtgat
ggcctgcgcaccaatgccctgcatggcgacaagtcccaggacgagcgcctcaaggccctg
gacgccttcaagcgtggcgaggtggatgtgctggtctgtaccgacgtggccgcgcgcggt
ctggacatcgccgacctgcccgccgtcttcaatttcgacgtgcccttcaacgccgaagac
tatgtgcaccgtatcggccgcacggggcgcgccggcgcctcgggcattgccgtcaccctg
gtcaccaagtccgatgcccgcctgacggccgagatcgagaagctgaccaagcgcaagatc
gagcttgaagccctggagctggaagacgagcgtccgcgccgtgcgccgcgtcgcgaaggc
tatggcgagtcgtcgggcgcttcgtcctacgcggccagcccggcccccgcgccgcgtgcg
ccgcgcccggcgccggcctcgcgcgatcccttcttcgacaagccttacgagcccagcctg
tcggacgatgccaagccggcctgggaaaagtcggcgccggctgcggccacggccggccgc
ggcggcctctcgccctatatcaagcccaagaagaaggtggcggctctttttggcgccaag
ccggcgccgcagcccgcagcggctcccgcctcccaggcgacagcccaggccgaggctccg
caagcctga
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