Shinella sp. XGS7: LHJ69_14770
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Entry
LHJ69_14770 CDS
T10581
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shin Shinella sp. XGS7
Pathway
shin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHJ69_14770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shin03019
]
LHJ69_14770
Enzymes [BR:
shin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHJ69_14770
Messenger RNA biogenesis [BR:
shin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHJ69_14770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UDF33872
LinkDB
All DBs
Position
complement(3197972..3199465)
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AA seq
497 aa
AA seq
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MTFDSLGLAAPLLKAIADAGYTSPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPML
HRLSATPAVKNARGKHMVRALVLTPTRELAAQVEESVKTYGKYLPLTSMVMFGGVGMQPQ
VNRLRDGVDILVATPGRLLDHHMQGTLDLSKIEILVIDEADRMLDMGFIPDIEKVLAILP
PKRQNLLFSATFSDEIKALADRLLNQPALIEVARRNQTNDAIAQKVHPVGRDRKKELLAH
LIKSGDWHQVLVFTRMKHGANRLTDYLNDQGISAMAIHGNKSQGARTKALAEFKSGELTC
LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGCQGEAVSLVCVDELNFLK
DIERLIKREIPKEAVPGFEPPVGEKPEPIVLGRMVLNPNGSRGRAPNPGGGGGGGRGGRP
GQGGGRPGGGGGGGGRPQGQGAGARAPGQGQGGRPAQAGAPRRDGGRPAQGGGGRPAGQG
GGGRPGGQGGRGGPPKR
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgactccctgggcctggcagcaccgctgctcaaggccattgccgacgccggc
tacacctcccccacccccatccaggcccaagccattcccgccgtcctccagggcggcgac
ctgctcgccggcgcccagaccggcaccggcaagaccgctggtttcaccctgcccatgctg
caccgtctctcggccaccccggccgtgaagaacgcacgcggcaagcacatggtgcgcgct
ctggtgctcacccccacccgcgagctggccgcccaggtcgaggaaagcgtcaagacctac
ggcaagtacctcccgctcaccagcatggtgatgttcggcggcgtgggcatgcagccccag
gtcaaccgcctgcgcgacggcgtggacatcctggtggccacccccggccgcctgctggac
caccatatgcagggcaccctggatctgagcaagatcgagatcctcgtcatcgacgaagcc
gaccgcatgctcgacatgggcttcatccccgatatcgagaaggtgctggccatcctgccg
cccaagcgccagaacctgctgttctcggccaccttcagcgatgagatcaaggccctggcc
gatcgtctgctgaaccagcccgccctgatcgaggtggcgcgtcgcaaccagaccaatgat
gcgatcgcacagaaggtccacccggtcggccgcgaccgcaagaaggaactgctggcccat
ctgatcaagagcggcgactggcaccaggtgctggtcttcacccgcatgaagcatggcgcc
aaccgcctgaccgactacctgaatgaccagggcatcagcgccatggccatccacggcaac
aagagccagggtgcgcgcaccaaggccctggccgagttcaagagcggcgagctgacctgc
ctggtggccaccgatatcgcggcccgcggcatcgacatcgaccagctgccccacgtcgtc
aactacgagctgcccaacgtccccgaggactatgtccatcgcatcggccgcaccggccgt
gccggctgccaaggcgaggcggtgagcctggtttgcgtggacgagctgaacttcctcaag
gacatcgaacgcctgatcaagcgcgagatccccaaggaagccgtgcccggtttcgagccc
ccggtgggcgagaagcccgagcccatcgtgctgggccgcatggtgctcaaccccaatggc
agccgcggtcgcgcacccaatccgggcggtggcggcggtggtggtcgcggcggtcgcccc
ggccagggcggtggccgccccggcggtggtggcggtggtggtggccgtccgcagggccag
ggcgcaggcgcccgcgccccgggccaaggccagggtggccgtccggcccaggccggcgcc
ccgcgccgcgatggcggacgccccgcccagggcggcgggggccgtcccgcgggtcagggt
ggcggtggccgccccggcggccagggtggccgcggcggcccgcccaagcgctaa
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