Shinella sp. XGS7: LHJ69_17385
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Entry
LHJ69_17385 CDS
T10581
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shin Shinella sp. XGS7
Pathway
shin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHJ69_17385 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shin03019
]
LHJ69_17385 (pnp)
03016 Transfer RNA biogenesis [BR:
shin03016
]
LHJ69_17385 (pnp)
Enzymes [BR:
shin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LHJ69_17385 (pnp)
Messenger RNA biogenesis [BR:
shin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LHJ69_17385 (pnp)
Transfer RNA biogenesis [BR:
shin03016
]
Prokaryotic type
tRNA degradation factors
LHJ69_17385 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_RRP5
S1_2
KH_KhpA-B
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
UDF37792
LinkDB
All DBs
Position
complement(3772932..3775076)
Genome browser
AA seq
714 aa
AA seq
DB search
MFNKVTKTFQWGPHTVTMETGEIARQSTGAVLVNIDDTVVLATVVAKNEPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH
DLENDPDVLSMVAASAALTISGVPFMGPVGGARVGYINGEYVLNPGKTQLLDSKMDLVVA
GTEAAVLMVESEADQLSEDVMLGAVVYGHEQGQIAINAIHELVREAGKPVWDWKAPAKDE
PFIAKLTELAEPALRAAYQIRSKQARTQACREAYAAVKAGLTAAGLEFDGVEVDGLLFEI
EARIVRSQILAGEPRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAVVVATLGTGE
DEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAEQ
FPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLSD
ILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALGQAQGGRKHILGEMVDA
VAGASTEVSQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGTTIDIAEDGTITIAST
DADKADLAKKRIEQITAEAEIGKVYEGPVTKILDFGALVNILPGKDGLLHISQIAHQRVE
KVTDFLSEGQIVKVKVLETDEKGRIKLSMKALIEREAAPAPAPAAPAAEEGAAE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaaggtcaccaaaaccttccagtggggtccccacaccgtcacgatggaaacc
ggcgagatcgctcgccagtccaccggcgccgtgctggtgaacattgacgacaccgtggtg
ctggccaccgtggtcgcgaagaatgagccgaagccgggccaggatttcttcccgctgacc
gtcaactaccaggaaaagacctacgccgccggcaagatcccgggtggctacttcaagcgc
gaaggccgtccgtcggaaaaggaaacgctggtttcccgcctgatcgaccgtccgatccgc
ccgctcttcccggaaggctacaagaacgacacgcaggtcgtcgtcacggtcgtccagcat
gatctcgaaaacgatcccgacgtcctgtcgatggttgccgcttcggctgcgctcacgatc
tccggcgttcccttcatgggcccggtcggcggcgcgcgcgtcggctacatcaacggcgaa
tacgtcctgaacccgggcaagacccagctgctggattccaagatggatctggtggtggcc
ggtaccgaagccgccgtgctgatggtggaatccgaagccgaccagctgagcgaagacgtg
atgctgggtgccgtggtctatggccatgagcagggccagattgccatcaacgccatccat
gagctggtgcgcgaagccggcaagccggtctgggactggaaggctccggccaaggatgaa
cccttcatcgcaaagctgaccgagctggccgagcccgccctgcgcgccgcctaccagatc
cgctccaagcaggcccgcacccaggcttgccgcgaggcttatgccgccgtcaaggctggt
ctgacggccgctggcctcgagttcgatggcgtggaagtcgacggtctgctgttcgagatc
gaagcccgcatcgtgcgcagccagatcctggccggcgagccccgcatcgacggccgcgat
ctcgaaaccgttcgcgccatcgtttcggaagtcggcatcctgccgcgcacgcacggctcg
gctctcttcacccgcggcgaaacccaggccgtggtcgttgccacgctcggcaccggcgaa
gacgagcagtatgtcgacagcctgaccggcatgtacaaggaacgcttcctgctgcactac
aacttcccgccctactcggtcggtgagacgggccgcatgggctccccgggccgccgcgaa
atcggccacggcaagcttgcctggcgtgcgatccgtccgatgctgccgacggcggaacag
ttcccctacacgctgcgcgtcgtctcggagatcaccgagtcgaacggctcgtcctcgatg
gccaccgtctgcggcacctcgctcgctctcatggacgccggcgttccgctggcaaagccg
gttgccggtatcgccatgggcctcatccttgaaggcgaccgtttcgcggttctctccgac
atcctcggcgacgaagaccacctcggcgacatggacttcaaggtcgccggcaccgccgac
ggcatcacctcgctgcagatggacatcaagatcgccggtatcaccgaagagatcatgaag
gtcgctctcggccaggcacagggcggccgcaagcacatcctcggcgagatggtggacgcc
gtggccggtgcctcgaccgaggtctcgcagttcgcgccccgcctctacaccatgaagatc
aatccggagaagatccgcgacgtgatcggcaagggcggcgccaccatccgtgcgctgacc
gaggaaaccggcaccaccatcgacatcgccgaggacggcaccatcaccatcgcctctacc
gatgccgacaaggccgacctggccaagaagcgcatcgagcagatcacggccgaggccgag
atcggcaaggtctacgaaggcccggtcaccaagatcctggacttcggcgccctggtcaac
atcctgccgggcaaggacggtctgctgcacatcagccagatcgcccaccagcgcgtggag
aaggtcaccgacttcctgagcgaaggccagatcgtcaaggtcaaggtgctggagaccgat
gagaagggtcgcatcaagctgtcgatgaaggccctgatcgagcgtgaagccgctccggct
cccgccccggcagccccggccgccgaagaaggcgccgcggagtaa
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