Shinella sp. XGS7: LHJ69_18330
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Entry
LHJ69_18330 CDS
T10581
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
shin Shinella sp. XGS7
Pathway
shin00061
Fatty acid biosynthesis
shin00071
Fatty acid degradation
shin01100
Metabolic pathways
shin01212
Fatty acid metabolism
shin02024
Quorum sensing
shin04146
Peroxisome
Module
shin_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
shin00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
LHJ69_18330
00071 Fatty acid degradation
LHJ69_18330
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
LHJ69_18330
09145 Cellular community - prokaryotes
02024 Quorum sensing
LHJ69_18330
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
shin01004
]
LHJ69_18330
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shin04147
]
LHJ69_18330
Enzymes [BR:
shin01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
LHJ69_18330
Lipid biosynthesis proteins [BR:
shin01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
LHJ69_18330
Exosome [BR:
shin04147
]
Exosomal proteins
Exosomal proteins of breast milk
LHJ69_18330
Exosomal proteins of breast cancer cells
LHJ69_18330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
UDF34521
LinkDB
All DBs
Position
complement(3980859..3982715)
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AA seq
618 aa
AA seq
DB search
MSAVSVSSAAPTATLADLPSLAALLDWRLAQSPEGEAYRQFDRAAGQWRSLSWRATGERV
LAHARALAALGLARGERVALLLPNGFETVCVDQAVLRQALVPVPMHAMDNPDSIAYVLAD
SGAALLVAQEARQWQQLRQSLAAQGLSLPALRRVVLLEGEADAADATDASAVPVQTLADW
LASGASHAAPAAQPRAEELAALVYTSGTTGKPKGVMLSHGNVMSNVRATLARVPARADDV
FLSFLPLSHTFERTAGYYLPIAAGCCVAFARSVAELSEDLRSQRPSILISVPRIYERVYS
ALQNKLAAAPLKAWLFAQAQAVGWRRFSRAQGLALEAGAPPAWLDALAWPLLSRLAAQPL
QAQFGGRLRLAISGGAALSGTLARCILGLGLPILQGYGMTETSPVIAANGVDDNDPATVG
RALDGVELRIGANQELLVRGPSVMQGYWNRPEDSAAAFSEGWLRTGDQAAIEGGRVRILG
RVKEIIVTSTGEKIAPADLELAIQADGLFEQAYCFGDNRPFIAALVVLSRSGWASLAAGL
GLDAQDPASLEAPAARAAALERIKGLTRSFPFYAQPRAVGLTLEPWSIESGLMTPTLKLK
RKNLAAHFAQRIEALYRR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgtttccgtctcgtccgccgcacccaccgccaccctggccgatctgccctcg
ctggcggccctgctggactggcgcctggcgcaaagccccgagggcgaggcctaccgccag
ttcgaccgcgcggccggccagtggcgcagcctgagctggcgcgccaccggcgagcgggtg
ctggcccatgcccgcgccctggcggcgctgggcctggcgcgcggtgagcgcgtggccctg
ctgctgcccaatggcttcgagaccgtgtgcgtggaccaggcggtgctgcgccaggccctg
gtgcccgtgcccatgcacgccatggacaacccggacagcattgcctacgtgctggccgac
agcggcgcggccctgctggtggcccaggaggcgcgccagtggcagcagctgcgccagagc
ctggcggcacaaggcctgagcctgccggcgctgcgccgcgtggtgctgctggaaggcgag
gctgatgctgccgatgccaccgatgccagcgccgtgccggtgcagaccctggccgactgg
ctggccagcggcgccagccacgcagccccggccgcccagccgcgcgccgaggagctggcc
gccctggtctacacctcgggcaccacgggcaagcccaagggcgtgatgctcagccatggc
aatgtgatgtcgaatgtgcgcgccaccctggcccgggtgccggcgcgcgcggacgatgtc
ttcctgtccttcctgccgctttcgcacaccttcgagcgcaccgcgggctactacctgccg
attgccgcgggctgctgcgtggcctttgcccgctcggtggccgagctctcggaagacctg
cgcagccagcgccccagcatcctgatctcggtgccgcgcatctatgagcgggtctacagc
gcgctgcagaacaagctggccgccgcgccgctcaaggcctggctcttcgcccaggcccag
gccgtgggctggcgccgcttcagccgggcccagggcctggcgctggaagcgggcgcaccg
ccggcctggctggacgccctggcctggcccctgctgtcgcgcctggcggcgcagcccctg
caggcccagttcggcgggcgcctgcgcctggctatcagcggcggtgccgcgctctcgggc
accctggcgcgctgcattctgggcctgggtctgcccattctgcagggctatggcatgacc
gagacctcgcccgtgatcgccgccaatggcgtggacgacaacgaccccgccaccgtgggc
cgcgccctggacggggtggagctgcgcatcggggcgaaccaggagctgctggtgcgcggc
cccagcgtgatgcagggctactggaatcgtccggaagacagcgccgccgccttcagcgag
ggctggctgcgcaccggcgaccaggccgccatcgagggcggccgggtgcgcatcctgggc
cgggtcaaggagatcatcgtgacctccaccggcgagaagatcgcgccggccgacctggag
ctggccatccaggccgacggtctcttcgagcaggcctactgctttggcgacaaccggccc
ttcatcgccgccctggtggtgctcagccgcagcggctgggccagcttggccgccggcctg
ggcctggatgcccaggaccccgccagcctggaggcgccggccgcgcgcgccgcggccctg
gagcgcatcaagggcctcacgcgcagcttccccttctacgctcagccgcgtgccgtgggc
ctgacgctggagccctggagcatcgagagcgggctgatgacgcccaccctcaagctcaag
cgcaagaacctggctgcgcatttcgcgcagcgcatcgaggccctgtaccggcgctga
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