Shinella sp. XGS7: LHJ69_18465
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Entry
LHJ69_18465 CDS
T10581
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
shin Shinella sp. XGS7
Pathway
shin00220
Arginine biosynthesis
shin00240
Pyrimidine metabolism
shin00250
Alanine, aspartate and glutamate metabolism
shin01100
Metabolic pathways
shin01110
Biosynthesis of secondary metabolites
shin01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
shin00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
LHJ69_18465 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
LHJ69_18465 (carB)
00220 Arginine biosynthesis
LHJ69_18465 (carB)
Enzymes [BR:
shin01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
LHJ69_18465 (carB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
Dala_Dala_lig_C
ATPgrasp_Ter
ATP-grasp
ATP-grasp_3
ATP-grasp_4
RimK
CoA_binding_2
Motif
Other DBs
NCBI-ProteinID:
UDF34546
LinkDB
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Position
complement(4014619..4017897)
Genome browser
AA seq
1092 aa
AA seq
DB search
MAKRTDIKSILIIGAGPIVIGQACEFDYSGTQACKALKEEGYRVILVNSNPATIMTDPGL
ADATYVEPITPEVVAKIIAKERPDALLPTMGGQTALNCALDLHRHGVLEKYKVEMIGANE
HAIEKAEDRLKFKDAMTKIGLDSAKSGIAHTLEEAWSVQKRIQAEIGGSGFPMVIRPSFT
LGGTGGGIAYNRSEFFEIINSGLDASPTTEVLIEESVLGWKEYEMEVVRDKADNCIIICS
IENIDPMGVHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGVETGGSNVQFAVNPENG
RLVVIEMNPRVSRSSALASKATGFPIAKIAAKLAIGYTLDELENDITGGATPASFEPSID
YVVTKIPRFAFEKFPGAEPTLTTAMKSVGEVMAIGRTFAESLQKALRGLETGLTGLTERS
TDREEIVQEIGEPGPERILFLADAFRVGMSLQEVFDETAVDPWFLAQIEQIVQIEASIKG
RTLESLSTAELRLLKQKGFSDKRLAKLLGTNQHEVRKARHAQGVRPVYKRVDTCAAEFAT
ETAYMYSTYDEECEAEPTDKKKIMVLGGGPNRIGQGIEFDYCCCHAAFALKDAGYEAIMV
NCNPETVSTDYDTSDRLYFEPLTAEDVIEILKAEQTNGEVVGVIVQFGGQTPLKLAEALE
KNGIPILGTAPDMIDLAEDRDRFQKLLQKLDLAQPNNGIAYSVEQARLVAGEIGFPLVVR
PSYVLGGRAMEIVHGDKDLERYMREAVRVSEKSPVLLDRFLEDAVEVDVDCISDGSDVMI
GGIMEHIEAAGIHSGDSACSLPPYTLAADIQDELRRQTAAMAKALKVIGLMNVQFAIQGD
VTKGLAACTVYVLEVNPRASRTVPYVSKATGQQLAKIAARCMAGVKLKDQKDRKGRAPAE
VVPPYYSVKEAVFPFNKFPGVDPILSPEMRSTGEVMGAAKTFGEAMLKSQLGAGSRLPRQ
GNVLITVKNADKPRAIAVAKDLHALGFGVVATKGTAAAIAEAGVPVTVVNKVKDGRPHIV
DMIKGGEIQLVFTTVDETRTAIADSRHIRQAALANRVTYYTTMAGCEAAVEGMKHQDGLL
VQSLQELHAELI
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacgtaccgacatcaagagcatcctcatcatcggcgcggggccgatcgtcatc
ggtcaggcctgcgaattcgattattccggcacccaggcgtgcaaggcgctgaaggaggaa
ggctaccgcgtcatcctcgtcaattccaacccggcaacgatcatgaccgatccgggcctc
gccgacgcgacctatgtcgagccgatcaccccggaagtcgtcgccaagatcatcgccaag
gagcgccccgacgcgctgctgccgacgatgggcggccagacggcgctcaactgcgccctg
gacctgcaccgccacggcgtgctggagaagtacaaggtcgagatgatcggtgccaacgag
cacgcgatcgagaaggccgaggaccgcctgaagttcaaggacgcgatgaccaagatcggc
ttggactcggccaagtccggcatcgcgcacacgctggaagaggcctggtccgtgcagaag
cgcatccaggccgagatcggcggcagcggcttccccatggtgatccgtcccagcttcacc
ctcggcggcaccggcggcggcatcgcctataaccgttcggaattcttcgagatcatcaat
tccggtctcgacgcctcgccgacgacggaagtgctcatcgaagaatccgtcctcggctgg
aaggaatatgaaatggaggtcgtccgcgacaaggcggacaactgcatcatcatctgctcc
atcgagaacatcgacccgatgggcgttcatacgggcgactcgatcaccgtcgcccccgcc
ttgaccctgacggacaaggaataccagatcatgcgcaacgcctcgatcgcggtgctgcgc
gagatcggcgtcgagaccggcggctccaacgtgcagttcgccgtcaacccggaaaacggc
cgtctcgtcgtcatcgagatgaacccgcgcgtttcgcgctcctccgcgctcgcctccaag
gccaccggcttcccgatcgccaagatcgcggcaaagcttgccatcggctacacgctcgat
gagctggagaacgacatcaccggcggcgcgaccccggcctccttcgaaccgtccatcgac
tatgtcgtgacgaagatcccgcgcttcgccttcgagaagttcccgggcgccgagccgacg
ctgaccaccgccatgaagtcggtcggtgaagtgatggccatcggccgcaccttcgccgaa
tcgctgcagaaggcgctgcgcggtctcgaaacgggcctcaccggtctgaccgagcgcagc
acggaccgcgaggagatcgtgcaggagatcggcgagcccggccccgagcgcatcctcttc
ctggccgacgccttccgcgtgggcatgagcctgcaggaggtgtttgacgagacggcggtg
gacccctggttcctggcccagatcgagcagatcgtgcagatcgaggcctcgatcaagggc
cgcacgctggaatctctgtccacggccgagctgcgcctgctgaagcaaaagggcttctcg
gacaagcgcctggccaagctgctgggcaccaaccagcacgaggtgcgcaaggcccgccac
gcccagggcgtgcgcccggtctacaagcgcgtggacacctgcgcggccgagttcgccacc
gagacggcctatatgtactccacctatgacgaggagtgcgaggccgagcccaccgacaag
aagaagatcatggtgctgggcggcggcccgaaccgcatcggccagggtatcgagttcgac
tattgctgctgccatgccgccttcgctttgaaggatgcaggctatgaagcgatcatggtc
aactgcaacccggaaacggtctccaccgactacgacacctccgaccgtctctatttcgag
ccgctgacggccgaggacgtcatcgagatcctgaaggccgaacagaccaacggcgaagtc
gtcggcgtcatcgtgcagttcggcggccagacgccgctgaagcttgccgaagcactggaa
aagaacggcattccgatcctcggcaccgcgcctgacatgatcgaccttgccgaggaccgc
gaccgcttccagaaactcctgcagaagctcgacctcgcccagccaaacaacggcatcgcc
tattcggtcgagcaggcccgcctcgtcgccggcgagatcggcttcccgctggtcgtgcgc
ccgtcctacgttctcggcggccgcgccatggaaatcgtgcacggcgataaggacctggag
cgctatatgcgcgaggccgtgcgcgtgagcgagaagtcgcccgtgctgctggaccgcttc
ctggaggatgcggtcgaggtggacgtggactgcatctccgacggcagcgatgtgatgatc
ggcggcatcatggagcacattgaggcggccggcatccactccggcgactcggcctgctcc
ctgccgccctacaccctggctgccgacatccaggacgagctgcgccgccagaccgccgcc
atggccaaggccctgaaggtgatcggcctgatgaatgtgcagttcgcgatccagggcgat
gtgaccaagggcctcgcggcctgcaccgtctatgtgctggaagtgaacccgcgcgcttcg
cgcaccgtgccctatgtgtccaaggccaccggccagcagctggccaagatcgccgcgcgc
tgcatggcgggcgtcaagctcaaggaccagaaggatcgcaagggccgcgcgccggccgag
gtggtgccgccgtactacagcgtcaaggaagccgtcttccccttcaacaagttcccgggc
gtggaccccatcctcagccccgagatgcgctccactggcgaggtgatgggcgcggccaag
acctttggcgaagccatgctgaagagccagctgggtgcgggcagccgcctgccgcgccag
ggcaatgtgctgatcacggtcaagaacgccgacaagccccgcgccatcgcggtggccaag
gatctgcacgccctgggctttggcgtggtggccaccaagggcacggccgcggcgattgct
gaggccggcgtgccggtgaccgtggtcaacaaggtcaaggacggccgtccgcacatcgtg
gacatgatcaagggcggcgagatccagctggtgttcaccaccgtggatgagacccgcacc
gccatcgccgacagccgccacatccgccaggcggccctggccaaccgcgtgacttactac
accaccatggccggctgcgaagccgccgtggagggcatgaagcaccaggacggcctgctg
gtgcaatccctgcaggaactgcacgccgaactgatctaa
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