Shinella sp. XGS7: LHJ69_18485
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Entry
LHJ69_18485 CDS
T10581
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
shin Shinella sp. XGS7
Brite
KEGG Orthology (KO) [BR:
shin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shin03009
]
LHJ69_18485 (rlmD)
Enzymes [BR:
shin01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LHJ69_18485 (rlmD)
Ribosome biogenesis [BR:
shin03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LHJ69_18485 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
Cons_hypoth95
RrnaAD
MTS
Methyltransf_32
Methyltransf_15
Methyltransf_11
Methyltrans_SAM
PCMT
UPF0020
PrmA
Methyltransf_12
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
UDF34550
LinkDB
All DBs
Position
complement(4020881..4022248)
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AA seq
455 aa
AA seq
DB search
MTQENEWLKVEALDLEAQGVARNTEGKVVFIDGALPGEEVQVSVGRKKNNWEQGTLMALR
RESSQRVTPGCPHFGLHAGACGGCKMQHLHAGAQVAVKQRVVEDNLWHLGKVKPETLLRP
IEGPTWGYRYRARFSVRYVAKKGVVLIGFHERKSRYVADMQVCKVVPASVSDLLMPLREL
IASMEERDRLPQIELAMGDNGEATVMALVLRHLNPLPEGDKAKLRAFAAAHPAVQWWLQP
KGPDTVQLLDEGGPELAYTLPEFGVRMPFKPTDFTQVNPHINSVLVGRALRLLQVRKDER
VIDWFCGLGNFTLPLATQAREVLGIEGSEALVQRSRENARRNGLEAKTRFVARNLFEMTP
ELLAADGVADKWLVDPPREGAFALAKAVADIAENPALAPGWTPPKRIVYVSCNPATLARD
AGLLVNVAGYRCTAASAVNMFPHTAHVESIAVFER
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaagagaacgaatggctgaaggtcgaggccctggacctcgaggcgcagggcgtg
gcccgcaataccgagggcaaggtggtcttcatcgatggcgccctgcccggcgaagaggtg
caggtcagcgtcggccgcaagaaaaacaactgggagcagggcacgctgatggccctgcgg
cgcgagagctcgcagcgcgtgacgccgggctgcccgcatttcggcctgcatgccggcgcc
tgcggcggctgcaagatgcagcatctgcacgccggtgcccaggtggcggtgaagcagcgc
gtggtggaggacaacctctggcatctgggcaaggtcaagcccgagaccctgctgcgcccc
atcgaggggcccacctggggctatcgctatcgcgcgcgcttctcggtgcgatatgtggcc
aagaagggcgtggtgctgatcggcttccatgagcgcaagagccgctatgtggccgatatg
caggtctgcaaggtggtgcccgccagcgtcagcgatctgctgatgccgctgcgcgagctg
atcgccagcatggaggaacgcgaccgcctgccgcagatcgagctggccatgggcgacaac
ggcgaggccacggtgatggccctggtgctgcgccatctgaatccgctgcccgagggtgac
aaggccaagctgcgggccttcgccgcggcccacccggcggtgcaatggtggctgcagccc
aagggccccgacaccgtgcagctgctggacgaaggcggccccgagctggcctacaccctg
cccgagtttggcgtgcgcatgcccttcaagcccaccgacttcacccaggtgaatccgcac
atcaacagcgtgctggtgggccgcgcgctgcgcctgctgcaggtgcgcaaggatgagcgg
gtgatcgactggttctgtggtctgggcaacttcaccctgccgctggccacccaagcgcgc
gaggtgctgggcatcgagggcagcgaggccctggtgcagcgctcgcgggagaatgcccgc
cgcaacggcctggaggccaagacccgtttcgtggcgcgcaatctcttcgagatgacgccc
gagctgctggccgccgatggcgtggccgacaaatggctggtggacccgccgcgcgagggc
gcctttgccctggccaaggccgtggccgacatcgccgagaacccggcgctggcgccgggc
tggaccccgcccaagcgcatcgtctatgtgtcttgcaacccggccaccctggcgcgcgat
gcgggcctgctggtgaatgtggccggctaccgctgcacggcggccagcgcggtgaatatg
ttcccgcacacggcgcatgtggagagcattgcggtcttcgaacgctga
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