Shinella sp. XGS7: LHJ69_20080
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Entry
LHJ69_20080 CDS
T10581
Name
(GenBank) dCMP deaminase family protein
KO
K01493
dCMP deaminase [EC:
3.5.4.12
]
Organism
shin Shinella sp. XGS7
Pathway
shin00240
Pyrimidine metabolism
shin01100
Metabolic pathways
shin01232
Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:
shin00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
LHJ69_20080
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
shin02044
]
LHJ69_20080
Enzymes [BR:
shin01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.4 In cyclic amidines
3.5.4.12 dCMP deaminase
LHJ69_20080
Secretion system [BR:
shin02044
]
Type II secretion system
Competence-related DNA transformation transporter (DNA-T) core components
LHJ69_20080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dCMP_cyt_deam_1
MafB19-deam
SNAD4
APOBEC3
APOBEC_N
Motif
Other DBs
NCBI-ProteinID:
UDF34838
LinkDB
All DBs
Position
complement(4369460..4370029)
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AA seq
189 aa
AA seq
DB search
MHDHDLALPQHNHSLIPWHSMFMGVALLAASRSKDHRKRNGACIASVDNKILGVGYNGLP
RGCNDQDPAYWADNDADPFQSRHSYIVHAEVNAILNCVVLPLTGSTIYTTQFPCPRCAQS
IIQVGIAQVVYMEKKLHQVALNSASDKMLADAGVRVLSLEQLESPSAQWCGKLDEFIRVT
GPVMHRGET
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgcacgatcacgaccttgcacttccgcagcacaaccattcgctgattccctggcattcg
atgttcatgggcgtggccctgctggcggcctcgcgctccaaggaccaccgcaagcgcaac
ggcgcctgcattgccagcgtggacaacaagatcctcggggtgggctacaacggcctgccg
cgcggctgcaatgaccaggatcccgcctactgggccgacaatgacgccgaccccttccag
tcgcggcacagctatatcgtgcatgccgaggtcaacgccatcctcaactgcgtggtcctg
cccctgaccggcagcaccatctacaccacccagttcccctgcccgcgctgcgcccagtcc
atcatccaggtgggcatcgcccaggtggtctatatggagaagaagctgcaccaggtggcg
ctcaacagcgcctccgacaagatgctggccgatgccggcgtgcgcgtgctctcgctggag
cagctggagtcgccctcggcccagtggtgcggcaagctcgacgagttcatccgcgtcacc
ggaccggtgatgcaccgcggcgagacttga
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